Difference between revisions of "TSS:Hg 63798.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SRAP= | |SRAP= | ||
|STRAA1= | |STRAA1= | ||
| − | |all_trans=AK024640:-28 ENST00000523259.5:-35 ENST00000602875.5 | + | |all_trans=LF343258:0 MA578835:0 AK024640:-28 ENST00000523259.5:-35 ENST00000602875.5:-35 AF092038:-40 ENST00000602775.5:-45 NM_001253764:-45 NR_045587:-45 BC067895:-45 NM_001035235:-62 BC156760:-77 BC152788:-77 AB590502:-77 LF211016:-87 MA446593:-87 BC040043:129 LQ718468:202 ENST00000520427.1:-266 AF293024:-266 AF293025:-266 AF293026:-266 DQ286291:-266 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=50 | |distance_to_tss=50 | ||
|end=140557411 | |end=140557411 | ||
| Line 11: | Line 11: | ||
|entrez_id=10011 | |entrez_id=10011 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=SRA | + | |gene_alias=SRA{{!}}SRAP{{!}}STRAA1{{!}}pp7684 |
|gene_description=steroid receptor RNA activator 1 | |gene_description=steroid receptor RNA activator 1 | ||
|gene_id=10011 | |gene_id=10011 | ||
| − | |gene_name= | + | |gene_name=SRA1 |
|gene_source=HGNC:11281 | |gene_source=HGNC:11281 | ||
|gene_symbol=SRA1 | |gene_symbol=SRA1 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:11281 | |hgnc_mgi_id=HGNC:11281 | ||
|nearest_ensembl=ENSG00000213523 | |nearest_ensembl=ENSG00000213523 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_045587 |
|nearest_refseq=NM_001035235 | |nearest_refseq=NM_001035235 | ||
|nearest_unigene=Hs.653135 | |nearest_unigene=Hs.653135 | ||
| − | |num_trans= | + | |num_trans=23 |
|pp7684= | |pp7684= | ||
|species=human | |species=human | ||
| Line 30: | Line 30: | ||
|start_of_center_position=140557405 | |start_of_center_position=140557405 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF343258 MA578835 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_63798.1 | |tss_id=hg_63798.1 | ||
Latest revision as of 08:13, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 140557405 |
|---|---|
| End of the center position in the TSS region: | 140557406 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF343258 MA578835 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | LF343258:0 MA578835:0 AK024640:-28 ENST00000523259.5:-35 ENST00000602875.5:-35 AF092038:-40 ENST00000602775.5:-45 NM_001253764:-45 NR_045587:-45 BC067895:-45 NM_001035235:-62 BC156760:-77 BC152788:-77 AB590502:-77 LF211016:-87 MA446593:-87 BC040043:129 LQ718468:202 ENST00000520427.1:-266 AF293024:-266 AF293025:-266 AF293026:-266 DQ286291:-266 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NR_045587 |
| Entrez ID: | 10011 |
| Nearest Unigene: | Hs.653135 |
| Nearest Refseq: | NM_001035235 |
| Nearest Ensembl: | ENSG00000213523 |
| Gene Name: | SRA1 |
| Gene Alias: | SRA|SRAP|STRAA1|pp7684 |
| Gene Description: | steroid receptor RNA activator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
