Difference between revisions of "TSS:Hg 72652.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=LC027945:-194 LC027946:-194 LC050979:-194 LC050980:-194 LC050981:-194 LC050982:-194 LC050983:-194 LC050984:-194 LC050985:-194 LC050986:-194 LC050987:-194 LC050988:-194 LC050989:-194 LC050990:-194 LC050991:-194 | + | |all_trans=KY781167:-79 NR_026816:-194 NR_152829:-194 NR_152831:-194 NR_152832:-194 NR_152833:-194 NR_152834:-194 NR_152835:-194 NR_152836:-194 NR_152830:-194 NR_152837:-194 NR_152828:-194 NR_152838:-194 NR_152839:-194 LC027945:-194 LC027946:-194 LC050979:-194 LC050980:-194 LC050981:-194 LC050982:-194 LC050983:-194 LC050984:-194 LC050985:-194 LC050986:-194 LC050987:-194 LC050988:-194 LC050989:-194 LC050990:-194 LC050991:-194 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance=- | + | |distance=-79 |
| − | |distance_to_tss= | + | |distance_to_tss=202 |
|end=31186123 | |end=31186123 | ||
|end_of_center_position=31186115 | |end_of_center_position=31186115 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=NCRNA00196 | |gene_alias=NCRNA00196 | ||
| − | |gene_description=psoriasis susceptibility 1 candidate 3 | + | |gene_description=psoriasis susceptibility 1 candidate 3 |
|gene_id=100130889 | |gene_id=100130889 | ||
| − | |gene_name= | + | |gene_name=PSORS1C3 |
|gene_source=HGNC:17203 | |gene_source=HGNC:17203 | ||
|gene_symbol=PSORS1C3 | |gene_symbol=PSORS1C3 | ||
| Line 18: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:17203 | |hgnc_mgi_id=HGNC:17203 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
|nearest_promoter_id=NR_026816 | |nearest_promoter_id=NR_026816 | ||
|nearest_refseq=NM_001134284 | |nearest_refseq=NM_001134284 | ||
|nearest_unigene=Hs.670091 | |nearest_unigene=Hs.670091 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=31186106 | |start=31186106 | ||
|start_of_center_position=31186114 | |start_of_center_position=31186114 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=KY781167 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_72652.1 | |tss_id=hg_72652.1 | ||
Latest revision as of 11:40, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 31186114 |
|---|---|
| End of the center position in the TSS region: | 31186115 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KY781167 |
|---|---|
| Distance: | -79 |
| Num_trans: | 29 |
| All_trans: | KY781167:-79 NR_026816:-194 NR_152829:-194 NR_152831:-194 NR_152832:-194 NR_152833:-194 NR_152834:-194 NR_152835:-194 NR_152836:-194 NR_152830:-194 NR_152837:-194 NR_152828:-194 NR_152838:-194 NR_152839:-194 LC027945:-194 LC027946:-194 LC050979:-194 LC050980:-194 LC050981:-194 LC050982:-194 LC050983:-194 LC050984:-194 LC050985:-194 LC050986:-194 LC050987:-194 LC050988:-194 LC050989:-194 LC050990:-194 LC050991:-194 |
TATA-Box annotation
| Distance to TSS: | 202 |
|---|---|
| Nearest PromoterID: | NR_026816 |
| Entrez ID: | 100130889 |
| Nearest Unigene: | Hs.670091 |
| Nearest Refseq: | NM_001134284 |
| Nearest Ensembl: | |
| Gene Name: | PSORS1C3 |
| Gene Alias: | NCRNA00196 |
| Gene Description: | psoriasis susceptibility 1 candidate 3 |
| Gene Type: | ncRNA |
| CpG%: | 0.055 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
