Difference between revisions of "TSS:Hg 154458.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans=ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 | + | |all_trans=ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 NM_001378336:0 NM_001130487:0 NM_001363869:0 NM_001378334:0 NM_001378333:0 NM_001378332:0 NM_001378335:0 ENST00000569578.5:12 ENST00000421602.6:12 AK126729:12 ENST00000561779.5:15 ENST00000565430.5:17 ENST00000567063.5:17 ENST00000566041.5:24 ENST00000566061.5:29 AK126574:29 CR936733:116 ENST00000394282.8:-250 ENST00000565434.5:485 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:14466 | |hgnc_mgi_id=HGNC:14466 | ||
|nearest_ensembl=ENSG00000103034 | |nearest_ensembl=ENSG00000103034 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363869 |
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=58464273 | |start=58464273 | ||
|start_of_center_position=58464281 | |start_of_center_position=58464281 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-44(TTTTTTAAACCG,+,0.00) |
| − | |transcript_name=ENST00000566065.5 ENST00000564867.5 ENST00000567454.5 | + | |transcript_name=ENST00000566065.5 ENST00000564867.5 ENST00000567454.5 NM_001378336 NM_001130487 NM_001363869 NM_001378334 NM_001378333 NM_001378332 NM_001378335 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_154458.1 | |tss_id=hg_154458.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=H3BNX9 H3BUH4 | + | |uniprot_id=H3BNX9 H3BUH4 Q9ULP0 |
}} | }} | ||
Revision as of 13:11, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58464281 |
|---|---|
| End of the center position in the TSS region: | 58464282 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000566065.5 ENST00000564867.5 ENST00000567454.5 NM_001378336 NM_001130487 NM_001363869 NM_001378334 NM_001378333 NM_001378332 NM_001378335 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000566065.5:0 ENST00000564867.5:0 ENST00000567454.5:0 NM_001378336:0 NM_001130487:0 NM_001363869:0 NM_001378334:0 NM_001378333:0 NM_001378332:0 NM_001378335:0 ENST00000569578.5:12 ENST00000421602.6:12 AK126729:12 ENST00000561779.5:15 ENST00000565430.5:17 ENST00000567063.5:17 ENST00000566041.5:24 ENST00000566061.5:29 AK126574:29 CR936733:116 ENST00000394282.8:-250 ENST00000565434.5:485 |
TATA-Box annotation
| Distance to TSS: | 191 |
|---|---|
| Nearest PromoterID: | NM_001363869 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -44(TTTTTTAAACCG,+,0.00) |
