Difference between revisions of "TSS:Hg 226396.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans=AK055038:11 ENST00000563317.5:12 ENST00000568464.5:12 ENST00000563022.5:12 ENST00000562930.5:12 ENST00000563978.5:12 ENST00000569923.5:12 ENST00000356752.8:12 ENST00000563799.5:12 ENST00000562999.5:12 ENST00000570248.5 | + | |all_trans=AK055038:11 ENST00000563317.5:12 ENST00000568464.5:12 ENST00000563022.5:12 ENST00000562930.5:12 ENST00000563978.5:12 ENST00000569923.5:12 ENST00000356752.8:12 ENST00000563799.5:12 ENST00000562999.5:12 ENST00000570248.5:12 NM_001242836:12 NM_001242835:12 NR_040072:12 NM_001242834:12 NM_001378347:12 NM_001378344:12 NM_001242833:12 AK296415:12 AK316089:12 AK299949:12 AK131248:12 AB044944:12 AB044945:12 ENST00000562731.5:14 ENST00000566585.5:14 ENST00000564960.1:14 ENST00000568424.1:15 ENST00000568640.5:-19 BC011795:24 AB033006:26 AL136584:26 BC001527:28 AF308608:29 ENST00000565088.5:-36 ENST00000566192.5:-79 AB385436:118 AM393094:118 AM393323:118 KU178760:118 KU178761:118 KJ903114:118 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=42 |
|species=human | |species=human | ||
|start=58500125 | |start=58500125 | ||
|start_of_center_position=58500128 | |start_of_center_position=58500128 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-17(CTGTATAAATGG,-,0.00) |
|transcript_name=AK055038 | |transcript_name=AK055038 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 10:05, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58500128 |
|---|---|
| End of the center position in the TSS region: | 58500129 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK055038 |
|---|---|
| Distance: | 11 |
| Num_trans: | 42 |
| All_trans: | AK055038:11 ENST00000563317.5:12 ENST00000568464.5:12 ENST00000563022.5:12 ENST00000562930.5:12 ENST00000563978.5:12 ENST00000569923.5:12 ENST00000356752.8:12 ENST00000563799.5:12 ENST00000562999.5:12 ENST00000570248.5:12 NM_001242836:12 NM_001242835:12 NR_040072:12 NM_001242834:12 NM_001378347:12 NM_001378344:12 NM_001242833:12 AK296415:12 AK316089:12 AK299949:12 AK131248:12 AB044944:12 AB044945:12 ENST00000562731.5:14 ENST00000566585.5:14 ENST00000564960.1:14 ENST00000568424.1:15 ENST00000568640.5:-19 BC011795:24 AB033006:26 AL136584:26 BC001527:28 AF308608:29 ENST00000565088.5:-36 ENST00000566192.5:-79 AB385436:118 AM393094:118 AM393323:118 KU178760:118 KU178761:118 KJ903114:118 |
TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NM_001242835 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -17(CTGTATAAATGG,-,0.00) |
