Difference between revisions of "TSS:Hg 226398.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans=AB385436:4 AM393094:4 AM393323:4 | + | |all_trans=AB385436:4 AM393094:4 AM393323:4 KU178760:4 KU178761:4 KJ903114:4 AF308608:-50 BC001527:-51 AB033006:-53 AL136584:-53 BC011795:-55 ENST00000568424.1:-64 ENST00000562731.5:-65 ENST00000566585.5:-65 ENST00000564960.1:-65 ENST00000563317.5:-67 ENST00000568464.5:-67 ENST00000563022.5:-67 ENST00000562930.5:-67 ENST00000563978.5:-67 ENST00000569923.5:-67 ENST00000356752.8:-67 ENST00000563799.5:-67 ENST00000562999.5:-67 ENST00000570248.5:-67 NM_001242836:-67 NM_001242835:-67 NR_040072:-67 NM_001242834:-67 NM_001378347:-67 NM_001378344:-67 NM_001242833:-67 AK296415:-67 AK316089:-67 AK299949:-67 AK131248:-67 AB044944:-67 AB044945:-67 AK055038:-68 ENST00000568640.5:-103 ENST00000565088.5:-120 ENST00000566192.5:-163 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=42 |
|species=human | |species=human | ||
|start=58500209 | |start=58500209 | ||
|start_of_center_position=58500227 | |start_of_center_position=58500227 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AB385436 AM393094 AM393323 | + | |transcript_name=AB385436 AM393094 AM393323 KU178760 KU178761 KJ903114 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_226398.1 | |tss_id=hg_226398.1 | ||
Revision as of 10:05, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58500227 |
|---|---|
| End of the center position in the TSS region: | 58500228 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB385436 AM393094 AM393323 KU178760 KU178761 KJ903114 |
|---|---|
| Distance: | 4 |
| Num_trans: | 42 |
| All_trans: | AB385436:4 AM393094:4 AM393323:4 KU178760:4 KU178761:4 KJ903114:4 AF308608:-50 BC001527:-51 AB033006:-53 AL136584:-53 BC011795:-55 ENST00000568424.1:-64 ENST00000562731.5:-65 ENST00000566585.5:-65 ENST00000564960.1:-65 ENST00000563317.5:-67 ENST00000568464.5:-67 ENST00000563022.5:-67 ENST00000562930.5:-67 ENST00000563978.5:-67 ENST00000569923.5:-67 ENST00000356752.8:-67 ENST00000563799.5:-67 ENST00000562999.5:-67 ENST00000570248.5:-67 NM_001242836:-67 NM_001242835:-67 NR_040072:-67 NM_001242834:-67 NM_001378347:-67 NM_001378344:-67 NM_001242833:-67 AK296415:-67 AK316089:-67 AK299949:-67 AK131248:-67 AB044944:-67 AB044945:-67 AK055038:-68 ENST00000568640.5:-103 ENST00000565088.5:-120 ENST00000566192.5:-163 |
TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NM_001242836 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
