Difference between revisions of "TSS:Hg 236186.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000565981.5:77 ENST00000568005.1:209 ENST00000569026.1:470 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=77 |
| − | |distance_to_tss= | + | |distance_to_tss=85 |
|end=64203708 | |end=64203708 | ||
|end_of_center_position=58505911 | |end_of_center_position=58505911 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=ubiquitin conjugating enzyme E2 U | + | |gene_description=ubiquitin conjugating enzyme E2 U |
| − | |gene_id= | + | |gene_id=65009 |
| − | |gene_name= | + | |gene_name=NDRG family member 4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:14466 |
| − | |gene_symbol= | + | |gene_symbol=NDRG4 |
| − | |gene_synonyms= | + | |gene_synonyms=KIAA1180 SMAP-8 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:14466 |
|nearest_ensembl=ENSG00000177414 | |nearest_ensembl=ENSG00000177414 | ||
|nearest_promoter_id=NM_152489 | |nearest_promoter_id=NM_152489 | ||
|nearest_refseq=NM_152489 | |nearest_refseq=NM_152489 | ||
|nearest_unigene=Hs.388746 | |nearest_unigene=Hs.388746 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=64203707 | |start=64203707 | ||
|start_of_center_position=58505910 | |start_of_center_position=58505910 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000565981.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236186.1 | |tss_id=hg_236186.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 13:50, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58505910 |
|---|---|
| End of the center position in the TSS region: | 58505911 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000565981.5 |
|---|---|
| Distance: | 77 |
| Num_trans: | 3 |
| All_trans: | ENST00000565981.5:77 ENST00000568005.1:209 ENST00000569026.1:470 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_152489 |
| Entrez ID: | 148581 |
| Nearest Unigene: | Hs.388746 |
| Nearest Refseq: | NM_152489 |
| Nearest Ensembl: | ENSG00000177414 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | - |
| Gene Description: | ubiquitin conjugating enzyme E2 U |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
