Difference between revisions of "TSS:Hg 154953.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HP2ALPHA2= | |HP2ALPHA2= | ||
|HPA1S= | |HPA1S= | ||
| − | |all_trans=ENST00000561927.3:-29 ENST00000576168.6:-29 ENST00000567185.7:-29 ENST00000567612.2 | + | |all_trans=ENST00000561927.3:-29 ENST00000576168.6:-29 ENST00000567185.7:-29 ENST00000567612.2:-29 M13192:-31 KJ897003:-31 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 11: | Line 11: | ||
|entrez_id=3240 | |entrez_id=3240 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=BP | + | |gene_alias=BP{{!}}HP2ALPHA2{{!}}HPA1S |
|gene_description=haptoglobin | |gene_description=haptoglobin | ||
|gene_id=3240 | |gene_id=3240 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:5141 | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000257017 | |nearest_ensembl=ENSG00000257017 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001126102 |
|nearest_refseq=NM_005143 | |nearest_refseq=NM_005143 | ||
|nearest_unigene=Hs.513711 | |nearest_unigene=Hs.513711 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=72056189 | |start=72056189 | ||
|start_of_center_position=72056196 | |start_of_center_position=72056196 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000561927.3 ENST00000576168.6 ENST00000567185.7 ENST00000567612.2 | + | |transcript_name=ENST00000561927.3 ENST00000576168.6 ENST00000567185.7 ENST00000567612.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_154953.1 | |tss_id=hg_154953.1 | ||
Revision as of 13:23, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72056196 |
|---|---|
| End of the center position in the TSS region: | 72056197 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000561927.3 ENST00000576168.6 ENST00000567185.7 ENST00000567612.2 |
|---|---|
| Distance: | -29 |
| Num_trans: | 6 |
| All_trans: | ENST00000561927.3:-29 ENST00000576168.6:-29 ENST00000567185.7:-29 ENST00000567612.2:-29 M13192:-31 KJ897003:-31 |
TATA-Box annotation
| Distance to TSS: | 1604 |
|---|---|
| Nearest PromoterID: | NM_001126102 |
| Entrez ID: | 3240 |
| Nearest Unigene: | Hs.513711 |
| Nearest Refseq: | NM_005143 |
| Nearest Ensembl: | ENSG00000257017 |
| Gene Name: | haptoglobin |
| Gene Alias: | BP|HP2ALPHA2|HPA1S |
| Gene Description: | haptoglobin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
