Difference between revisions of "TSS:Hg 236287.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans= | + | |all_trans=AK091316:22 ENST00000562854.1:30 ENST00000562371.5:-40 LF374730:63 MA610307:63 AF370390:-130 ENST00000562539.1:-163 LF374731:-178 MA610308:-178 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance= | + | |distance=22 |
|distance_to_tss=-85 | |distance_to_tss=-85 | ||
|end=58464005 | |end=58464005 | ||
| Line 11: | Line 11: | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1{{!}}SMAP-8{{!}}SMAP8 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
| − | |gene_id= | + | |gene_id=79726 |
| − | |gene_name= | + | |gene_name=WD repeat domain 59 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:25706 |
| − | |gene_symbol= | + | |gene_symbol=WDR59 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ12270 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:25706 |
|nearest_ensembl=ENSG00000103034 | |nearest_ensembl=ENSG00000103034 | ||
|nearest_promoter_id=NM_001130487 | |nearest_promoter_id=NM_001130487 | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=58464004 | |start=58464004 | ||
|start_of_center_position=74915996 | |start_of_center_position=74915996 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK091316 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236287.1 | |tss_id=hg_236287.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 13:53, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74915996 |
|---|---|
| End of the center position in the TSS region: | 74915997 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK091316 |
|---|---|
| Distance: | 22 |
| Num_trans: | 9 |
| All_trans: | AK091316:22 ENST00000562854.1:30 ENST00000562371.5:-40 LF374730:63 MA610307:63 AF370390:-130 ENST00000562539.1:-163 LF374731:-178 MA610308:-178 |
TATA-Box annotation
| Distance to TSS: | -85 |
|---|---|
| Nearest PromoterID: | NM_001130487 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | WD repeat domain 59 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
