Difference between revisions of "TSS:Hg 69761.1"
From referenceTSS
| Line 2: | Line 2: | ||
|TTMA= | |TTMA= | ||
|TTMC= | |TTMC= | ||
| − | |all_trans=ENST00000617887.4:208 NM_001258276 | + | |all_trans=ENST00000296978.4:-37 NM_001258277:-37 ENST00000617887.4:208 NM_001258276:208 AK315824:312 AB067500:-320 BC044246:389 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=-37 |
| − | |distance_to_tss=- | + | |distance_to_tss=-195 |
|end=130366073 | |end=130366073 | ||
|end_of_center_position=130366064 | |end_of_center_position=130366064 | ||
| − | |entrez_id= | + | |entrez_id=154075 |
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=sterile alpha motif domain containing 3 |
|gene_id=114801 | |gene_id=114801 | ||
|gene_name=transmembrane protein 200A | |gene_name=transmembrane protein 200A | ||
| Line 20: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:21075 | |hgnc_mgi_id=HGNC:21075 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000164483 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001258275 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_152552 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.440508 |
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=130366053 | |start=130366053 | ||
|start_of_center_position=130366063 | |start_of_center_position=130366063 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000296978.4 NM_001258277 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_69761.1 | |tss_id=hg_69761.1 | ||
Revision as of 10:32, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 130366063 |
|---|---|
| End of the center position in the TSS region: | 130366064 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000296978.4 NM_001258277 |
|---|---|
| Distance: | -37 |
| Num_trans: | 7 |
| All_trans: | ENST00000296978.4:-37 NM_001258277:-37 ENST00000617887.4:208 NM_001258276:208 AK315824:312 AB067500:-320 BC044246:389 |
TATA-Box annotation
| Distance to TSS: | -195 |
|---|---|
| Nearest PromoterID: | NM_001258275 |
| Entrez ID: | 154075 |
| Nearest Unigene: | Hs.440508 |
| Nearest Refseq: | NM_152552 |
| Nearest Ensembl: | ENSG00000164483 |
| Gene Name: | transmembrane protein 200A |
| Gene Alias: | - |
| Gene Description: | sterile alpha motif domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
