Difference between revisions of "TSS:Hg 241577.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000392429.1:-83 NM_052913:-83 AB052099:-83 | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-83 |
|distance_to_tss=1003702 | |distance_to_tss=1003702 | ||
|end=18810982 | |end=18810982 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2223 |
| − | |gene_name= | + | |gene_id=114801 |
| + | |gene_name=transmembrane protein 200A | ||
| + | |gene_source=HGNC:21075 | ||
| + | |gene_symbol=TMEM200A | ||
| + | |gene_synonyms=TTMC | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:21075 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_134286 |
|nearest_refseq=NR_134286 | |nearest_refseq=NR_134286 | ||
|nearest_unigene=Hs.407197 | |nearest_unigene=Hs.407197 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=18810970 | |start=18810970 | ||
|start_of_center_position=130437199 | |start_of_center_position=130437199 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000392429.1 NM_052913 AB052099 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_241577.1 | |tss_id=hg_241577.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A8K2A1 Q86VY9 | ||
}} | }} | ||
Revision as of 15:55, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 130437199 |
|---|---|
| End of the center position in the TSS region: | 130437200 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000392429.1 NM_052913 AB052099 |
|---|---|
| Distance: | -83 |
| Num_trans: | 3 |
| All_trans: | ENST00000392429.1:-83 NM_052913:-83 AB052099:-83 |
TATA-Box annotation
| Distance to TSS: | 1003702 |
|---|---|
| Nearest PromoterID: | NR_134286 |
| Entrez ID: | 646241 |
| Nearest Unigene: | Hs.407197 |
| Nearest Refseq: | NR_134286 |
| Nearest Ensembl: | |
| Gene Name: | transmembrane protein 200A |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2223 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
