Difference between revisions of "TSS:Hg 236905.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CLTCL2= | |CLTCL2= | ||
|Hc= | |Hc= | ||
| − | |all_trans= | + | |all_trans=ENST00000582151.1:-2 NM_001330073:116 NR_024603:116 KY814480:116 KY814481:116 LF384756:116 MA620333:116 ENST00000572936.5:135 AF059752:277 ENST00000571822.5:290 ENST00000396501.8:297 BC001898:305 ENST00000571391.5:317 ENST00000578267.5:317 ENST00000585188.5:317 AK225401:317 AK075299:317 AF038961:317 AK027742:317 ENST00000359822.10:318 ENST00000580708.5:321 ENST00000580834.5:321 ENST00000572836.5:321 ENST00000577088.5:321 ENST00000250124.11:321 ENST00000584378.5:321 NM_004870:321 AK297691:321 AK314527:321 AK297001:321 AK225432:321 ENST00000423172.6:322 AK055923:322 AK300083:322 AK300140:325 ENST00000576066.5:329 ENST00000584479.5:329 ENST00000572719.5:329 ENST00000579445.5:331 CU674920:331 HQ448685:331 KJ898044:331 KR709838:331 KR709839:331 KR709840:331 KU178478:332 KU178479:332 KU178480:332 DQ499597:332 ENST00000581886.5:334 ENST00000575256.1:339 ENST00000570458.5:343 ENST00000585217.5:344 ENST00000576272.5:354 ENST00000581380.1:362 ENST00000574558.1:364 DQ585508:395 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=-2 |
| − | |distance_to_tss= | + | |distance_to_tss=26 |
|end=59619923 | |end=59619923 | ||
|end_of_center_position=7583531 | |end_of_center_position=7583531 | ||
|entrez_id=1213 | |entrez_id=1213 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=CHC | + | |gene_alias=CHC{{!}}CHC17{{!}}CLH-17{{!}}CLTCL2{{!}}Hc{{!}}MRD56 |
|gene_description=clathrin heavy chain | |gene_description=clathrin heavy chain | ||
| − | |gene_name= | + | |gene_id=9526 |
| + | |gene_name=mannose-P-dolichol utilization defect 1 | ||
| + | |gene_source=HGNC:7207 | ||
| + | |gene_symbol=MPDU1 | ||
| + | |gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7207 | ||
|nearest_ensembl=ENSG00000141367 | |nearest_ensembl=ENSG00000141367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004859 |
|nearest_refseq=NM_004859 | |nearest_refseq=NM_004859 | ||
|nearest_unigene=Hs.491351 | |nearest_unigene=Hs.491351 | ||
| − | |num_trans= | + | |num_trans=57 |
|species=human | |species=human | ||
|start=59619918 | |start=59619918 | ||
|start_of_center_position=7583530 | |start_of_center_position=7583530 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000582151.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236905.1 | |tss_id=hg_236905.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=J3KSI4 | ||
}} | }} | ||
Revision as of 14:07, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7583530 |
|---|---|
| End of the center position in the TSS region: | 7583531 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000582151.1 |
|---|---|
| Distance: | -2 |
| Num_trans: | 57 |
| All_trans: | ENST00000582151.1:-2 NM_001330073:116 NR_024603:116 KY814480:116 KY814481:116 LF384756:116 MA620333:116 ENST00000572936.5:135 AF059752:277 ENST00000571822.5:290 ENST00000396501.8:297 BC001898:305 ENST00000571391.5:317 ENST00000578267.5:317 ENST00000585188.5:317 AK225401:317 AK075299:317 AF038961:317 AK027742:317 ENST00000359822.10:318 ENST00000580708.5:321 ENST00000580834.5:321 ENST00000572836.5:321 ENST00000577088.5:321 ENST00000250124.11:321 ENST00000584378.5:321 NM_004870:321 AK297691:321 AK314527:321 AK297001:321 AK225432:321 ENST00000423172.6:322 AK055923:322 AK300083:322 AK300140:325 ENST00000576066.5:329 ENST00000584479.5:329 ENST00000572719.5:329 ENST00000579445.5:331 CU674920:331 HQ448685:331 KJ898044:331 KR709838:331 KR709839:331 KR709840:331 KU178478:332 KU178479:332 KU178480:332 DQ499597:332 ENST00000581886.5:334 ENST00000575256.1:339 ENST00000570458.5:343 ENST00000585217.5:344 ENST00000576272.5:354 ENST00000581380.1:362 ENST00000574558.1:364 DQ585508:395 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_004859 |
| Entrez ID: | 1213 |
| Nearest Unigene: | Hs.491351 |
| Nearest Refseq: | NM_004859 |
| Nearest Ensembl: | ENSG00000141367 |
| Gene Name: | mannose-P-dolichol utilization defect 1 |
| Gene Alias: | CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 |
| Gene Description: | clathrin heavy chain |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
