Difference between revisions of "TSS:Hg 236500.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RHOIP3= | |RHOIP3= | ||
|RIP3= | |RIP3= | ||
| − | |all_trans= | + | |all_trans=ENST00000394821.2:120 AK308014:120 ENST00000650711.1:121 NM_001045:121 AK313166:121 ENST00000261707.7:-150 ENST00000401766.6:-184 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.2 | |cpg_percent=0.2 | ||
| − | |distance= | + | |distance=120 |
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
|end=17042750 | |end=17042750 | ||
| Line 12: | Line 12: | ||
|entrez_id=23164 | |entrez_id=23164 | ||
|gc_percent=0.850746 | |gc_percent=0.850746 | ||
| − | |gene_alias=M-RIP | + | |gene_alias=M-RIP{{!}}MRIP{{!}}RHOIP3{{!}}RIP3{{!}}p116Rip |
|gene_description=myosin phosphatase Rho interacting protein | |gene_description=myosin phosphatase Rho interacting protein | ||
| − | |gene_id= | + | |gene_id=6532 |
| − | |gene_name= | + | |gene_name=solute carrier family 6 member 4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:11050 |
| − | |gene_symbol= | + | |gene_symbol=SLC6A4 |
| − | |gene_synonyms= | + | |gene_synonyms=5-HTT SERT1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:11050 |
|nearest_ensembl=ENSG00000133030 | |nearest_ensembl=ENSG00000133030 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015134 |
|nearest_refseq=NM_015134 | |nearest_refseq=NM_015134 | ||
|nearest_unigene=Hs.462341 | |nearest_unigene=Hs.462341 | ||
| − | |num_trans= | + | |num_trans=7 |
|p116Rip= | |p116Rip= | ||
|species=human | |species=human | ||
| Line 31: | Line 31: | ||
|start_of_center_position=30235817 | |start_of_center_position=30235817 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000394821.2 AK308014 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236500.1 | |tss_id=hg_236500.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=J3KPR9 |
}} | }} | ||
Revision as of 13:58, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 30235817 |
|---|---|
| End of the center position in the TSS region: | 30235818 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000394821.2 AK308014 |
|---|---|
| Distance: | 120 |
| Num_trans: | 7 |
| All_trans: | ENST00000394821.2:120 AK308014:120 ENST00000650711.1:121 NM_001045:121 AK313166:121 ENST00000261707.7:-150 ENST00000401766.6:-184 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_015134 |
| Entrez ID: | 23164 |
| Nearest Unigene: | Hs.462341 |
| Nearest Refseq: | NM_015134 |
| Nearest Ensembl: | ENSG00000133030 |
| Gene Name: | solute carrier family 6 member 4 |
| Gene Alias: | M-RIP|MRIP|RHOIP3|RIP3|p116Rip |
| Gene Description: | myosin phosphatase Rho interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.2 |
| GC%: | 0.850746 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
