Difference between revisions of "TSS:Hg 242401.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RII-BETA= | |RII-BETA= | ||
| + | |all_trans=CU692902:19 KJ904885:20 AK057042:-57 ENST00000415009.5:-58 ENST00000453700.7:-74 BC006426:-74 BC024256:-74 AK130444:-94 AK294949:-98 ENST00000382368.8:-115 NM_001363441:-115 NM_001367781:-115 NM_001367780:-115 NM_024963:-115 NM_001321213:-115 NM_001363442:-115 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| − | |distance= | + | |distance=19 |
| − | |distance_to_tss= | + | |distance_to_tss=27 |
|end=107044738 | |end=107044738 | ||
|end_of_center_position=5513694 | |end_of_center_position=5513694 | ||
|entrez_id=5577 | |entrez_id=5577 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
| − | |gene_alias=PRKAR2 | + | |gene_alias=PRKAR2{{!}}RII-BETA |
|gene_description=protein kinase cAMP-dependent type II regulatory subunit beta | |gene_description=protein kinase cAMP-dependent type II regulatory subunit beta | ||
| − | |gene_name= | + | |gene_id=80028 |
| + | |gene_name=F-box and leucine rich repeat protein 18 | ||
| + | |gene_source=HGNC:21874 | ||
| + | |gene_symbol=FBXL18 | ||
| + | |gene_synonyms=FLJ11467 Fbl18 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21874 | ||
|nearest_ensembl=ENSG00000005249 | |nearest_ensembl=ENSG00000005249 | ||
|nearest_promoter_id=NM_002736 | |nearest_promoter_id=NM_002736 | ||
|nearest_refseq=NM_002736 | |nearest_refseq=NM_002736 | ||
|nearest_unigene=Hs.433068 | |nearest_unigene=Hs.433068 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=107044726 | |start=107044726 | ||
|start_of_center_position=5513693 | |start_of_center_position=5513693 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=CU692902 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_242401.1 | |tss_id=hg_242401.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:14, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5513693 |
|---|---|
| End of the center position in the TSS region: | 5513694 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU692902 |
|---|---|
| Distance: | 19 |
| Num_trans: | 16 |
| All_trans: | CU692902:19 KJ904885:20 AK057042:-57 ENST00000415009.5:-58 ENST00000453700.7:-74 BC006426:-74 BC024256:-74 AK130444:-94 AK294949:-98 ENST00000382368.8:-115 NM_001363441:-115 NM_001367781:-115 NM_001367780:-115 NM_024963:-115 NM_001321213:-115 NM_001363442:-115 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_002736 |
| Entrez ID: | 5577 |
| Nearest Unigene: | Hs.433068 |
| Nearest Refseq: | NM_002736 |
| Nearest Ensembl: | ENSG00000005249 |
| Gene Name: | F-box and leucine rich repeat protein 18 |
| Gene Alias: | PRKAR2|RII-BETA |
| Gene Description: | protein kinase cAMP-dependent type II regulatory subunit beta |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
