Difference between revisions of "TSS:Hg 226681.1"
From referenceTSS
| Line 5: | Line 5: | ||
|PC2= | |PC2= | ||
|PCHC1= | |PCHC1= | ||
| − | |all_trans=EF608070:103 EF608071:264 | + | |all_trans=ENST00000649249.1:-76 EF608070:103 EF608071:264 ENST00000648859.1:284 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-76 |
| − | |distance_to_tss= | + | |distance_to_tss=3456 |
|end=41621125 | |end=41621125 | ||
|end_of_center_position=41621119 | |end_of_center_position=41621119 | ||
|entrez_id=3872 | |entrez_id=3872 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=39.1 | + | |gene_alias=39.1{{!}}CK-17{{!}}K17{{!}}PC{{!}}PC2{{!}}PCHC1 |
|gene_description=keratin 17 | |gene_description=keratin 17 | ||
|gene_id=3872 | |gene_id=3872 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_000422 | |nearest_refseq=NM_000422 | ||
|nearest_unigene=Hs.2785 | |nearest_unigene=Hs.2785 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=41621112 | |start=41621112 | ||
|start_of_center_position=41621118 | |start_of_center_position=41621118 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000649249.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_226681.1 | |tss_id=hg_226681.1 | ||
Revision as of 10:12, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 41621118 |
|---|---|
| End of the center position in the TSS region: | 41621119 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000649249.1 |
|---|---|
| Distance: | -76 |
| Num_trans: | 4 |
| All_trans: | ENST00000649249.1:-76 EF608070:103 EF608071:264 ENST00000648859.1:284 |
TATA-Box annotation
| Distance to TSS: | 3456 |
|---|---|
| Nearest PromoterID: | NM_000422 |
| Entrez ID: | 3872 |
| Nearest Unigene: | Hs.2785 |
| Nearest Refseq: | NM_000422 |
| Nearest Ensembl: | ENSG00000128422 |
| Gene Name: | keratin 17 |
| Gene Alias: | 39.1|CK-17|K17|PC|PC2|PCHC1 |
| Gene Description: | keratin 17 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
