Difference between revisions of "TSS:Hg 236611.1"
From referenceTSS
| Line 6: | Line 6: | ||
|SERT= | |SERT= | ||
|SERT1= | |SERT1= | ||
| − | |all_trans= | + | |all_trans=EF608068:-93 ENST00000493253.5:-180 BX647923:-180 CU687210:-188 ENST00000577817.3:-348 AB528302:-395 DQ891101:-398 DQ894283:-398 ENST00000540235.5:-425 BC072018:-425 BC072019:-439 BC011901:-441 X62571:-441 BC000159:-443 BC056421:-443 ENST00000311208.13:-459 ENST00000491673.1:-459 NM_000422:-459 AK304373:-459 AK095342:-461 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=-93 |
| − | |distance_to_tss= | + | |distance_to_tss=-121 |
|end=30235818 | |end=30235818 | ||
|end_of_center_position=41624108 | |end_of_center_position=41624108 | ||
|entrez_id=6532 | |entrez_id=6532 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=5-HTT | + | |gene_alias=5-HTT{{!}}5-HTTLPR{{!}}5HTT{{!}}HTT{{!}}OCD1{{!}}SERT{{!}}SERT1{{!}}hSERT |
|gene_description=solute carrier family 6 member 4 | |gene_description=solute carrier family 6 member 4 | ||
| − | |gene_id= | + | |gene_id=3872 |
| − | |gene_name= | + | |gene_name=keratin 17 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:6427 |
| − | |gene_symbol= | + | |gene_symbol=KRT17 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hSERT= | |hSERT= | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:6427 |
|nearest_ensembl=ENSG00000108576 | |nearest_ensembl=ENSG00000108576 | ||
|nearest_promoter_id=NM_001045 | |nearest_promoter_id=NM_001045 | ||
|nearest_refseq=NM_001045 | |nearest_refseq=NM_001045 | ||
|nearest_unigene=Hs.29792 | |nearest_unigene=Hs.29792 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=30235817 | |start=30235817 | ||
|start_of_center_position=41624107 | |start_of_center_position=41624107 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=EF608068 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236611.1 | |tss_id=hg_236611.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 14:00, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 41624107 |
|---|---|
| End of the center position in the TSS region: | 41624108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | EF608068 |
|---|---|
| Distance: | -93 |
| Num_trans: | 20 |
| All_trans: | EF608068:-93 ENST00000493253.5:-180 BX647923:-180 CU687210:-188 ENST00000577817.3:-348 AB528302:-395 DQ891101:-398 DQ894283:-398 ENST00000540235.5:-425 BC072018:-425 BC072019:-439 BC011901:-441 X62571:-441 BC000159:-443 BC056421:-443 ENST00000311208.13:-459 ENST00000491673.1:-459 NM_000422:-459 AK304373:-459 AK095342:-461 |
TATA-Box annotation
| Distance to TSS: | -121 |
|---|---|
| Nearest PromoterID: | NM_001045 |
| Entrez ID: | 6532 |
| Nearest Unigene: | Hs.29792 |
| Nearest Refseq: | NM_001045 |
| Nearest Ensembl: | ENSG00000108576 |
| Gene Name: | keratin 17 |
| Gene Alias: | 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT |
| Gene Description: | solute carrier family 6 member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
