Difference between revisions of "TSS:Hg 242191.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000405218.6:-75 NM_001163147:-145 AK312863:173 BC098403:181 ENST00000405192.6:196 ENST00000430479.6:206 ENST00000433547.1:206 NM_004956:206 NM_001370556:206 AB209202:208 ENST00000483075.1:233 BC106762:460 BC106763:460 | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-75 |
| − | |distance_to_tss= | + | |distance_to_tss=114942 |
|end=35004199 | |end=35004199 | ||
|end_of_center_position=13989872 | |end_of_center_position=13989872 | ||
| Line 10: | Line 11: | ||
|gene_alias=ANKS1 | |gene_alias=ANKS1 | ||
|gene_description=ankyrin repeat and sterile alpha motif domain containing 1A | |gene_description=ankyrin repeat and sterile alpha motif domain containing 1A | ||
| − | |gene_name= | + | |gene_id=2115 |
| + | |gene_name=ETS variant transcription factor 1 | ||
| + | |gene_source=HGNC:3490 | ||
| + | |gene_symbol=ETV1 | ||
| + | |gene_synonyms=ER81 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000064999 | |nearest_ensembl=ENSG00000064999 | ||
|nearest_promoter_id=NM_015245 | |nearest_promoter_id=NM_015245 | ||
|nearest_refseq=NM_015245 | |nearest_refseq=NM_015245 | ||
|nearest_unigene=Hs.656492 | |nearest_unigene=Hs.656492 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=35004195 | |start=35004195 | ||
|start_of_center_position=13989871 | |start_of_center_position=13989871 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-30(GCCCTTAAAAGG,-,0.00),-29(CCCTTAAAAGGG,+,0.00),-28(CCTTAAAAGGGA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000405218.6 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242191.1 | |tss_id=hg_242191.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=P50549 | ||
}} | }} | ||
Revision as of 16:10, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13989871 |
|---|---|
| End of the center position in the TSS region: | 13989872 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000405218.6 |
|---|---|
| Distance: | -75 |
| Num_trans: | 13 |
| All_trans: | ENST00000405218.6:-75 NM_001163147:-145 AK312863:173 BC098403:181 ENST00000405192.6:196 ENST00000430479.6:206 ENST00000433547.1:206 NM_004956:206 NM_001370556:206 AB209202:208 ENST00000483075.1:233 BC106762:460 BC106763:460 |
TATA-Box annotation
| Distance to TSS: | 114942 |
|---|---|
| Nearest PromoterID: | NM_015245 |
| Entrez ID: | 23294 |
| Nearest Unigene: | Hs.656492 |
| Nearest Refseq: | NM_015245 |
| Nearest Ensembl: | ENSG00000064999 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | ANKS1 |
| Gene Description: | ankyrin repeat and sterile alpha motif domain containing 1A |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -30(GCCCTTAAAAGG,-,0.00),-29(CCCTTAAAAGGG,+,0.00),-28(CCTTAAAAGGGA,+,0.00) |
