Difference between revisions of "TSS:Hg 78879.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000439360.5 | + | |all_trans=ENST00000439360.5:0 ENST00000448096.1:-8 ENST00000656515.1:13 NM_001367741:13 NM_001367727:13 NM_001367726:13 NM_001367737:13 NM_001367752:13 NM_001367728:13 NM_001367725:13 NM_001367722:13 ENST00000657342.1:24 NR_110037:-27 ENST00000428557.1:32 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-17 |
|end=66654554 | |end=66654554 | ||
|end_of_center_position=66654550 | |end_of_center_position=66654550 | ||
| − | |entrez_id= | + | |entrez_id=27342 |
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=- | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
| − | |gene_description= | + | |gene_description=RAB guanine nucleotide exchange factor 1 |
|gene_id=100996437 | |gene_id=100996437 | ||
| − | |gene_name= | + | |gene_name=RABGEF1 |
|gene_source=EntrezGene:100996437 | |gene_source=EntrezGene:100996437 | ||
|gene_symbol=LOC100996437 | |gene_symbol=LOC100996437 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000154710 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367737 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_014504 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.530053 |
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=66654545 | |start=66654545 | ||
|start_of_center_position=66654549 | |start_of_center_position=66654549 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000439360.5 | + | |transcript_name=ENST00000439360.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_78879.1 | |tss_id=hg_78879.1 | ||
Latest revision as of 14:05, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 66654549 |
|---|---|
| End of the center position in the TSS region: | 66654550 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000439360.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000439360.5:0 ENST00000448096.1:-8 ENST00000656515.1:13 NM_001367741:13 NM_001367727:13 NM_001367726:13 NM_001367737:13 NM_001367752:13 NM_001367728:13 NM_001367725:13 NM_001367722:13 ENST00000657342.1:24 NR_110037:-27 ENST00000428557.1:32 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_001367737 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | RABGEF1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
