Difference between revisions of "TSS:Hg 168281.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PTDSR= | |PTDSR= | ||
|PTDSR1= | |PTDSR1= | ||
| − | |all_trans=ENST00000397625. | + | |all_trans=ENST00000397625.9:0 NM_001081461:0 NM_015167:0 BC047003:2 AK021780:16 ENST00000445478.6:-43 AK294816:-43 AK314541:54 ENST00000585429.1:89 AB011157:111 BC066654:111 AB073711:117 KJ893343:117 AB383913:118 ENST00000303996.10:-148 ENST00000542934.5:-148 EF527406:-148 EF527407:-148 ENST00000617192.4:-163 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=-8 |
|end=76726636 | |end=76726636 | ||
|end_of_center_position=76726614 | |end_of_center_position=76726614 | ||
|entrez_id=23210 | |entrez_id=23210 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=PSR | + | |gene_alias=PSR{{!}}PTDSR{{!}}PTDSR1 |
| − | |gene_description=arginine demethylase and lysine hydroxylase | + | |gene_description=jumonji domain containing 6, arginine demethylase and lysine hydroxylase |
|gene_id=23210 | |gene_id=23210 | ||
| − | |gene_name=jumonji domain containing 6 | + | |gene_name=jumonji domain containing 6, arginine demethylase and lysine hydroxylase |
|gene_source=HGNC:19355 | |gene_source=HGNC:19355 | ||
|gene_symbol=JMJD6 | |gene_symbol=JMJD6 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:19355 | |hgnc_mgi_id=HGNC:19355 | ||
|nearest_ensembl=ENSG00000070495 | |nearest_ensembl=ENSG00000070495 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001081461 |
|nearest_refseq=NM_015167 | |nearest_refseq=NM_015167 | ||
|nearest_unigene=Hs.514505 | |nearest_unigene=Hs.514505 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=76726591 | |start=76726591 | ||
|start_of_center_position=76726613 | |start_of_center_position=76726613 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=1(CGACTTTAAAGG,-,0.00),2(GACTTTAAAGGC,-,0.00),3(ACTTTAAAGGCG,+,0.00) |
| − | |transcript_name=ENST00000397625. | + | |transcript_name=ENST00000397625.9 NM_001081461 NM_015167 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_168281.1 | |tss_id=hg_168281.1 | ||
Revision as of 18:29, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 76726613 |
|---|---|
| End of the center position in the TSS region: | 76726614 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000397625.9 NM_001081461 NM_015167 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000397625.9:0 NM_001081461:0 NM_015167:0 BC047003:2 AK021780:16 ENST00000445478.6:-43 AK294816:-43 AK314541:54 ENST00000585429.1:89 AB011157:111 BC066654:111 AB073711:117 KJ893343:117 AB383913:118 ENST00000303996.10:-148 ENST00000542934.5:-148 EF527406:-148 EF527407:-148 ENST00000617192.4:-163 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001081461 |
| Entrez ID: | 23210 |
| Nearest Unigene: | Hs.514505 |
| Nearest Refseq: | NM_015167 |
| Nearest Ensembl: | ENSG00000070495 |
| Gene Name: | jumonji domain containing 6, arginine demethylase and lysine hydroxylase |
| Gene Alias: | PSR|PTDSR|PTDSR1 |
| Gene Description: | jumonji domain containing 6, arginine demethylase and lysine hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 1(CGACTTTAAAGG,-,0.00),2(GACTTTAAAGGC,-,0.00),3(ACTTTAAAGGCG,+,0.00) |
