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Difference between revisions of "TSS:Hg 172748.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|MISP1=
 
|MISP1=
|all_trans=NM_173481:0 NR_135168:0 ENST00000215582.7:5 uc002lpo.4:5 BC052236:5 BX648389:12 BC042125:25
+
|all_trans=ENST00000215582.8:0 NR_135168:0 NM_173481:0 BC052236:5 BX648389:12 BC042125:25
 
|chr=chr19
 
|chr=chr19
 
|cpg_percent=0.05
 
|cpg_percent=0.05
 
|distance=0
 
|distance=0
|distance_to_tss=0
+
|distance_to_tss=1
 
|end=751121
 
|end=751121
 
|end_of_center_position=751113
 
|end_of_center_position=751113
 
|entrez_id=126353
 
|entrez_id=126353
 
|gc_percent=0.746269
 
|gc_percent=0.746269
|gene_alias=C19orf21
+
|gene_alias=C19orf21{{!}}MISP1
 
|gene_description=mitotic spindle positioning
 
|gene_description=mitotic spindle positioning
 
|gene_id=126353
 
|gene_id=126353
Line 16: Line 16:
 
|gene_source=HGNC:27000
 
|gene_source=HGNC:27000
 
|gene_symbol=MISP
 
|gene_symbol=MISP
|gene_synonyms=Caprice DKFZp686H18209
+
|gene_synonyms=Caprice DKFZp686H18209 MISP1
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:27000
 
|hgnc_mgi_id=HGNC:27000
Line 23: Line 23:
 
|nearest_refseq=NM_173481
 
|nearest_refseq=NM_173481
 
|nearest_unigene=Hs.439180
 
|nearest_unigene=Hs.439180
|num_trans=7
+
|num_trans=6
 
|species=human
 
|species=human
 
|start=751104
 
|start=751104
 
|start_of_center_position=751112
 
|start_of_center_position=751112
 
|strand=+
 
|strand=+
|transcript_name=NM_173481 NR_135168
+
|transcript_name=ENST00000215582.8 NR_135168 NM_173481
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_172748.1
 
|tss_id=hg_172748.1

Revision as of 20:12, 16 June 2021

Basic information about the TSS


TSS ID:hg_172748.1
Species:human
Chr:chr19
TSS Classification:yes
Start:751104
End:751121
Strand:+
TSS Score:1
Start of the center position in the TSS region:751112
End of the center position in the TSS region:751113



Gene and protein annotation


Transcript_name:ENST00000215582.8 NR_135168 NM_173481
Distance:0
GeneID:126353
HGNC/MGI_ID:HGNC:27000
UniProt_ID:Q8IVT2
Gene_name:mitotic spindle positioning
Gene_symbol:MISP
Gene_synonyms:Caprice DKFZp686H18209 MISP1
Gene_source:HGNC:27000



Transcript annotation


Transcript_name:ENST00000215582.8 NR_135168 NM_173481
Distance:0
Num_trans:6
All_trans:ENST00000215582.8:0 NR_135168:0 NM_173481:0 BC052236:5 BX648389:12 BC042125:25



TATA-Box annotation


Distance to TSS:1
Nearest PromoterID:NM_173481
Entrez ID:126353
Nearest Unigene:Hs.439180
Nearest Refseq:NM_173481
Nearest Ensembl:ENSG00000099812
Gene Name:mitotic spindle positioning
Gene Alias:C19orf21|MISP1
Gene Description:mitotic spindle positioning
Gene Type:protein-coding
CpG%:0.05
GC%:0.746269
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):