Difference between revisions of "TSS:Hg 154461.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SMAP-8= | |SMAP-8= | ||
|SMAP8= | |SMAP8= | ||
| − | |all_trans= | + | |all_trans=HGNC:14466 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_020465 | |nearest_refseq=NM_020465 | ||
|nearest_unigene=Hs.322430 | |nearest_unigene=Hs.322430 | ||
| − | |num_trans= | + | |num_trans=65009 |
|species=human | |species=human | ||
|start=58500135 | |start=58500135 | ||
| Line 30: | Line 30: | ||
|strand=+ | |strand=+ | ||
|tata_box=-33(CTGTATAAATGG,-,0.00) | |tata_box=-33(CTGTATAAATGG,-,0.00) | ||
| − | |transcript_name=ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 | + | |transcript_name=ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 AK055038 AK296415 AK316089 AK299949 AK131248 AB044944 AB044945 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_154461.1 | |tss_id=hg_154461.1 | ||
Latest revision as of 13:17, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58500143 |
|---|---|
| End of the center position in the TSS region: | 58500144 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000563317.5 ENST00000568464.5 ENST00000563022.5 ENST00000562930.5 ENST00000563978.5 ENST00000569923.5 ENST00000356752.8 ENST00000563799.5 ENST00000562999.5 ENST00000570248.5 ENST00000562731.5 ENST00000566585.5 ENST00000564960.1 ENST00000568424.1 AK055038 AK296415 AK316089 AK299949 AK131248 AB044944 AB044945 |
|---|---|
| Distance: | 0 |
| Num_trans: | 65009 |
| All_trans: | HGNC:14466 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001242836 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1|SMAP-8|SMAP8 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CTGTATAAATGG,-,0.00) |
