Difference between revisions of "TSS:Hg 184532.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_080607:106 ENST00000373461.8:113 uc002xhk.5:113 AK056177:113 ENST00000373459.4:120 uc061wwm.1:120 AL834410:131 ENST00000448944.1:151 uc061wwn.1:151 B...") |
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| Line 3: | Line 3: | ||
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |dJ1118M15.2= | ||
|distance=106 | |distance=106 | ||
|distance_to_tss=-113 | |distance_to_tss=-113 | ||
|end=37902991 | |end=37902991 | ||
| + | |end_of_center_position=37902985 | ||
|entrez_id=128434 | |entrez_id=128434 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C20orf102 | + | |gene_alias=C20orf102 |
|gene_description=V-set and transmembrane domain containing 2 like | |gene_description=V-set and transmembrane domain containing 2 like | ||
|gene_id=128434 | |gene_id=128434 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=37902977 | |start=37902977 | ||
| + | |start_of_center_position=37902984 | ||
|strand=+ | |strand=+ | ||
|tata_box="-33(CGCTTTAAAAAT,-,0.00),-32(GCTTTAAAAATC,+,0.00)" | |tata_box="-33(CGCTTTAAAAAT,-,0.00),-32(GCTTTAAAAATC,+,0.00)" | ||
Revision as of 10:38, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 37902984 |
|---|---|
| End of the center position in the TSS region: | 37902985 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_080607 |
|---|---|
| Distance: | 106 |
| Num_trans: | 12 |
| All_trans: | NM_080607:106 ENST00000373461.8:113 uc002xhk.5:113 AK056177:113 ENST00000373459.4:120 uc061wwm.1:120 AL834410:131 ENST00000448944.1:151 uc061wwn.1:151 BC033818:174 JF432582:359 AB528555:360 |
TATA-Box annotation
| Distance to TSS: | -113 |
|---|---|
| Nearest PromoterID: | NM_080607 |
| Entrez ID: | 128434 |
| Nearest Unigene: | Hs.517029 |
| Nearest Refseq: | NM_080607 |
| Nearest Ensembl: | ENSG00000132821 |
| Gene Name: | V-set and transmembrane domain containing 2 like |
| Gene Alias: | C20orf102 |
| Gene Description: | V-set and transmembrane domain containing 2 like |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(CGCTTTAAAAAT,-,0.00),-32(GCTTTAAAAATC,+,0.00)" |
