Difference between revisions of "TSS:Hg 185490.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000613231.1:0 ENST00000614771.1:0 NR_131157:0 uc061xzg.1:0 uc002xyu.2:0 AK056098:0 |chr=chr20 |cpg_percent=0.125 |distance=0 |distance_to_tss=-8 |...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-8 | |distance_to_tss=-8 | ||
|end=57710196 | |end=57710196 | ||
| + | |end_of_center_position=57710175 | ||
|entrez_id=105416157 | |entrez_id=105416157 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| Line 24: | Line 25: | ||
|species=human | |species=human | ||
|start=57710153 | |start=57710153 | ||
| + | |start_of_center_position=57710174 | ||
|strand=+ | |strand=+ | ||
|tata_box="-26(GGCTCTTAAAGG,-,0.00),-25(GCTCTTAAAGGG,+,0.00),-25(GCTCTTAAAGGG,-,0.00),-24(CTCTTAAAGGGC,+,0.00),-23(TCTTAAAGGGCC,+,0.00)" | |tata_box="-26(GGCTCTTAAAGG,-,0.00),-25(GCTCTTAAAGGG,+,0.00),-25(GCTCTTAAAGGG,-,0.00),-24(CTCTTAAAGGGC,+,0.00),-23(TCTTAAAGGGCC,+,0.00)" | ||
Revision as of 13:11, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 57710174 |
|---|---|
| End of the center position in the TSS region: | 57710175 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000613231.1 ENST00000614771.1 NR_131157 uc061xzg.1 uc002xyu.2 AK056098 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000613231.1:0 ENST00000614771.1:0 NR_131157:0 uc061xzg.1:0 uc002xyu.2:0 AK056098:0 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NR_131157 |
| Entrez ID: | 105416157 |
| Nearest Unigene: | Hs.628947 |
| Nearest Refseq: | NR_131157 |
| Nearest Ensembl: | ENSG00000278709 |
| Gene Name: | NF-kappaB interacting long non-coding RNA |
| Gene Alias: | - |
| Gene Description: | NF-kappaB interacting lncRNA |
| Gene Type: | ncRNA |
| CpG%: | 0.125 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-26(GGCTCTTAAAGG,-,0.00),-25(GCTCTTAAAGGG,+,0.00),-25(GCTCTTAAAGGG,-,0.00),-24(CTCTTAAAGGGC,+,0.00),-23(TCTTAAAGGGCC,+,0.00)" |
