Difference between revisions of "TSS:Hg 232136.1"
From referenceTSS
| Line 5: | Line 5: | ||
|distance=-4 | |distance=-4 | ||
|distance_to_tss=949 | |distance_to_tss=949 | ||
| − | |end= | + | |end=119593490 |
|end_of_center_position=119593490 | |end_of_center_position=119593490 | ||
|entrez_id=2869 | |entrez_id=2869 | ||
| Line 24: | Line 24: | ||
|num_trans=5 | |num_trans=5 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=119593489 |
|start_of_center_position=119593489 | |start_of_center_position=119593489 | ||
| − | |strand= | + | |strand=- |
|tata_box=-34(GCCTTTTAAAGG,-,0.00),-33(CCTTTTAAAGGC,+,0.00),-32(CTTTTAAAGGCA,+,0.00) | |tata_box=-34(GCCTTTTAAAGG,-,0.00),-33(CCTTTTAAAGGC,+,0.00),-32(CTTTTAAAGGCA,+,0.00) | ||
|transcript_name=ENST00000462373.1 | |transcript_name=ENST00000462373.1 | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_232136.1 | |tss_id=hg_232136.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 08:30, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119593489 |
|---|---|
| End of the center position in the TSS region: | 119593490 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000462373.1 |
|---|---|
| Distance: | -4 |
| Num_trans: | 5 |
| All_trans: | ENST00000462373.1:-4 ENST00000470781.5:-23 D64015:-23 BC128140:-23 BC128141:-23 |
TATA-Box annotation
| Distance to TSS: | 949 |
|---|---|
| Nearest PromoterID: | NM_005308 |
| Entrez ID: | 2869 |
| Nearest Unigene: | Hs.524625 |
| Nearest Refseq: | NM_005308 |
| Nearest Ensembl: | ENSG00000198873 |
| Gene Name: | TIA1 cytotoxic granule associated RNA binding protein like 1 |
| Gene Alias: | FP2025|GPRK5 |
| Gene Description: | G protein-coupled receptor kinase 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GCCTTTTAAAGG,-,0.00),-33(CCTTTTAAAGGC,+,0.00),-32(CTTTTAAAGGCA,+,0.00) |
