Difference between revisions of "TSS:Hg 233208.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 ENST00000483835.5:236 ENST00000465634.5:260 ENST00000438025.5:286 | |all_trans=AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 ENST00000483835.5:236 ENST00000465634.5:260 ENST00000438025.5:286 | ||
| − | |chr= | + | |chr=chr11 |
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=-84 | |distance=-84 | ||
|distance_to_tss=35 | |distance_to_tss=35 | ||
| − | |end= | + | |end=5680093 |
|end_of_center_position=5680093 | |end_of_center_position=5680093 | ||
|entrez_id=100129405 | |entrez_id=100129405 | ||
| Line 24: | Line 24: | ||
|num_trans=20 | |num_trans=20 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=5680092 |
|start_of_center_position=5680092 | |start_of_center_position=5680092 | ||
| − | |strand= | + | |strand=- |
|transcript_name=AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 | |transcript_name=AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_233208.1 | |tss_id=hg_233208.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B1Q3L0 | |uniprot_id=B1Q3L0 | ||
}} | }} | ||
Revision as of 08:55, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5680092 |
|---|---|
| End of the center position in the TSS region: | 5680093 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 |
|---|---|
| Distance: | -84 |
| Num_trans: | 20 |
| All_trans: | AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 ENST00000483835.5:236 ENST00000465634.5:260 ENST00000438025.5:286 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NR_024117 |
| Entrez ID: | 100129405 |
| Nearest Unigene: | Hs.656361 |
| Nearest Refseq: | NR_024117 |
| Nearest Ensembl: | |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | MSTO2 |
| Gene Description: | misato family member 2, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.11 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
