Difference between revisions of "TSS:Hg 234784.1"
From referenceTSS
| Line 5: | Line 5: | ||
|distance=141 | |distance=141 | ||
|distance_to_tss=27501 | |distance_to_tss=27501 | ||
| − | |end= | + | |end=25095995 |
|end_of_center_position=25095995 | |end_of_center_position=25095995 | ||
|entrez_id=105370361 | |entrez_id=105370361 | ||
| Line 24: | Line 24: | ||
|num_trans=10 | |num_trans=10 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=25095994 |
|start_of_center_position=25095994 | |start_of_center_position=25095994 | ||
| − | |strand= | + | |strand=+ |
|tata_box=71(CCTTTTATGTAA,+,0.00) | |tata_box=71(CCTTTTATGTAA,+,0.00) | ||
|transcript_name=ENST00000281589.5 NM_030979 | |transcript_name=ENST00000281589.5 NM_030979 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_234784.1 | |tss_id=hg_234784.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5VX58 Q9H361 | |uniprot_id=Q5VX58 Q9H361 | ||
}} | }} | ||
Revision as of 09:31, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25095994 |
|---|---|
| End of the center position in the TSS region: | 25095995 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000281589.5 NM_030979 |
|---|---|
| Distance: | 141 |
| Num_trans: | 10 |
| All_trans: | ENST00000281589.5:141 NM_030979:141 AL136900:160 AK313336:163 BC045608:167 BC027617:177 AF132026:181 DQ895297:204 DQ892103:204 KJ897288:204 |
TATA-Box annotation
| Distance to TSS: | 27501 |
|---|---|
| Nearest PromoterID: | NR_148221 |
| Entrez ID: | 105370361 |
| Nearest Unigene: | Hs.134728 |
| Nearest Refseq: | NR_148221 |
| Nearest Ensembl: | |
| Gene Name: | poly(A) binding protein cytoplasmic 3 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105370361 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 71(CCTTTTATGTAA,+,0.00) |
