Difference between revisions of "TSS:Hg 243521.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SEC16L= | |SEC16L= | ||
|all_trans=AB462505:47 BC009316:-123 DQ596276:337 AK026170:-351 DQ593671:-410 | |all_trans=AB462505:47 BC009316:-123 DQ596276:337 AK026170:-351 DQ593671:-410 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=47 | |distance=47 | ||
|distance_to_tss=-5393 | |distance_to_tss=-5393 | ||
| − | |end= | + | |end=2665 |
|end_of_center_position=2661 | |end_of_center_position=2661 | ||
|entrez_id=158055 | |entrez_id=158055 | ||
| Line 26: | Line 26: | ||
|p250= | |p250= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=2656 |
|start_of_center_position=2660 | |start_of_center_position=2660 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=AB462505 | |transcript_name=AB462505 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243521.1 | |tss_id=hg_243521.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 2660 |
|---|---|
| End of the center position in the TSS region: | 2661 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB462505 |
|---|---|
| Distance: | 47 |
| Num_trans: | 5 |
| All_trans: | AB462505:47 BC009316:-123 DQ596276:337 AK026170:-351 DQ593671:-410 |
TATA-Box annotation
| Distance to TSS: | -5393 |
|---|---|
| Nearest PromoterID: | NM_152571 |
| Entrez ID: | 158055 |
| Nearest Unigene: | Hs.212613 |
| Nearest Refseq: | NM_152571 |
| Nearest Ensembl: | |
| Gene Name: | C9orf163 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 163 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
