Difference between revisions of "TSS:Hg 243535.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NELF= | |NELF= | ||
|all_trans=DQ596276:71 AB462505:-219 DQ598641:299 AB026838:299 LX251243:299 LZ235584:299 S55822:299 ENST00000361390.2:376 LP790444:376 AK074482:376 LP790447:376 LP790441:376 BC017294:390 BC061915:391 BC009316:-397 AF216862:417 | |all_trans=DQ596276:71 AB462505:-219 DQ598641:299 AB026838:299 LX251243:299 LZ235584:299 S55822:299 ENST00000361390.2:376 LP790444:376 AK074482:376 LP790447:376 LP790441:376 BC017294:390 BC061915:391 BC009316:-397 AF216862:417 | ||
| − | |chr= | + | |chr=chrM |
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=71 | |distance=71 | ||
|distance_to_tss=-28161 | |distance_to_tss=-28161 | ||
| − | |end= | + | |end=2931 |
|end_of_center_position=2931 | |end_of_center_position=2931 | ||
|entrez_id=26012 | |entrez_id=26012 | ||
| Line 25: | Line 25: | ||
|num_trans=16 | |num_trans=16 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=2930 |
|start_of_center_position=2930 | |start_of_center_position=2930 | ||
| − | |strand= | + | |strand=+ |
|tata_box=29(CCTTTACTGGGG,+,0.00) | |tata_box=29(CCTTTACTGGGG,+,0.00) | ||
|transcript_name=DQ596276 | |transcript_name=DQ596276 | ||
Latest revision as of 12:52, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 2930 |
|---|---|
| End of the center position in the TSS region: | 2931 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | DQ596276 |
|---|---|
| Distance: | 71 |
| Num_trans: | 16 |
| All_trans: | DQ596276:71 AB462505:-219 DQ598641:299 AB026838:299 LX251243:299 LZ235584:299 S55822:299 ENST00000361390.2:376 LP790444:376 AK074482:376 LP790447:376 LP790441:376 BC017294:390 BC061915:391 BC009316:-397 AF216862:417 |
TATA-Box annotation
| Distance to TSS: | -28161 |
|---|---|
| Nearest PromoterID: | NM_001130969 |
| Entrez ID: | 26012 |
| Nearest Unigene: | Hs.455336 |
| Nearest Refseq: | NM_015537 |
| Nearest Ensembl: | ENSG00000165802 |
| Gene Name: | NSMF |
| Gene Alias: | HH9|NELF |
| Gene Description: | NMDA receptor synaptonuclear signaling and neuronal migration factor |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 29(CCTTTACTGGGG,+,0.00) |
