Difference between revisions of "TSS:Hg 224379.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=M59217:41 ENST00000517713.5:-69 ENST00000522165.5:-69 ENST00000520133.5:-69 uc057tuo.1:-69 uc057tup.1:-69 uc057tuq.1:-69 ENST00000520267.5:-375 ENST0000...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COLXIIIA1= | ||
|all_trans=M59217:41 ENST00000517713.5:-69 ENST00000522165.5:-69 ENST00000520133.5:-69 uc057tuo.1:-69 uc057tup.1:-69 uc057tuq.1:-69 ENST00000520267.5:-375 ENST00000398969.7:-375 uc057tum.1:-375 uc057tun.1:-375 BC136385:-375 | |all_trans=M59217:41 ENST00000517713.5:-69 ENST00000522165.5:-69 ENST00000520133.5:-69 uc057tuo.1:-69 uc057tup.1:-69 uc057tuq.1:-69 ENST00000520267.5:-375 ENST00000398969.7:-375 uc057tum.1:-375 uc057tun.1:-375 BC136385:-375 | ||
|chr=chr10 | |chr=chr10 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=614 | |distance_to_tss=614 | ||
|end=69802511 | |end=69802511 | ||
| + | |end_of_center_position=69802502 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=CMS19 | + | |gene_alias=CMS19 |
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
|gene_id=1305 | |gene_id=1305 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=69802492 | |start=69802492 | ||
| + | |start_of_center_position=69802501 | ||
|strand=+ | |strand=+ | ||
|transcript_name=M59217 | |transcript_name=M59217 | ||
Revision as of 04:36, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 69802501 |
|---|---|
| End of the center position in the TSS region: | 69802502 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | M59217 |
|---|---|
| Distance: | 41 |
| Num_trans: | 12 |
| All_trans: | M59217:41 ENST00000517713.5:-69 ENST00000522165.5:-69 ENST00000520133.5:-69 uc057tuo.1:-69 uc057tup.1:-69 uc057tuq.1:-69 ENST00000520267.5:-375 ENST00000398969.7:-375 uc057tum.1:-375 uc057tun.1:-375 BC136385:-375 |
TATA-Box annotation
| Distance to TSS: | 614 |
|---|---|
| Nearest PromoterID: | NM_080805 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 |
| Gene Alias: | CMS19 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
