Difference between revisions of "TSS:Hg 225468.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000281589.4:-34 uc001upy.4:-34 NM_030979:216 AL136900:233 AK313336:236 BC045608:240 BC027617:250 AF132026:254 DQ895297:277 DQ892103:277 KJ897288:2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PABPL3= | ||
|all_trans=ENST00000281589.4:-34 uc001upy.4:-34 NM_030979:216 AL136900:233 AK313336:236 BC045608:240 BC027617:250 AF132026:254 DQ895297:277 DQ892103:277 KJ897288:277 | |all_trans=ENST00000281589.4:-34 uc001upy.4:-34 NM_030979:216 AL136900:233 AK313336:236 BC045608:240 BC027617:250 AF132026:254 DQ895297:277 DQ892103:277 KJ897288:277 | ||
|chr=chr13 | |chr=chr13 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-226 | |distance_to_tss=-226 | ||
|end=25095922 | |end=25095922 | ||
| + | |end_of_center_position=25095912 | ||
|entrez_id=5042 | |entrez_id=5042 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=PABP3 | + | |gene_alias=PABP3 |
|gene_description=poly(A) binding protein cytoplasmic 3 | |gene_description=poly(A) binding protein cytoplasmic 3 | ||
|gene_id=5042 | |gene_id=5042 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=25095901 | |start=25095901 | ||
| + | |start_of_center_position=25095911 | ||
|strand=+ | |strand=+ | ||
| + | |tPABP= | ||
|transcript_name=ENST00000281589.4 uc001upy.4 | |transcript_name=ENST00000281589.4 uc001upy.4 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:48, 13 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 25095911 |
|---|---|
| End of the center position in the TSS region: | 25095912 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000281589.4 uc001upy.4 |
|---|---|
| Distance: | -34 |
| Num_trans: | 11 |
| All_trans: | ENST00000281589.4:-34 uc001upy.4:-34 NM_030979:216 AL136900:233 AK313336:236 BC045608:240 BC027617:250 AF132026:254 DQ895297:277 DQ892103:277 KJ897288:277 |
TATA-Box annotation
| Distance to TSS: | -226 |
|---|---|
| Nearest PromoterID: | NM_030979 |
| Entrez ID: | 5042 |
| Nearest Unigene: | Hs.458280 |
| Nearest Refseq: | NM_030979 |
| Nearest Ensembl: | ENSG00000151846 |
| Gene Name: | "poly(A) binding protein, cytoplasmic 3" |
| Gene Alias: | PABP3 |
| Gene Description: | poly(A) binding protein cytoplasmic 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
