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Difference between revisions of "TSS:Hg 226395.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000565088.5:0 ENST00000568640.5:0 uc059vbq.1:0 uc010vii.3:0 AK055038:24 ENST00000563317.5:25 ENST00000568464.5:25 ENST00000563022.5:25 ENST0000056...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|SMAP-8=
 +
|SMAP8=
 
|all_trans=ENST00000565088.5:0 ENST00000568640.5:0 uc059vbq.1:0 uc010vii.3:0 AK055038:24 ENST00000563317.5:25 ENST00000568464.5:25 ENST00000563022.5:25 ENST00000562930.5:25 ENST00000563978.5:25 ENST00000569923.5:25 ENST00000356752.8:25 ENST00000563799.5:25 ENST00000562999.5:25 ENST00000570248.5:25 NM_001242834:25 NR_040072:25 NM_001242836:25 NM_001242835:25 NM_001242833:25 uc059vbr.1:25 uc059vbs.1:25 uc059vbt.1:25 uc059vbu.1:25 uc059vbv.1:25 uc010vih.3:25 uc010vig.3:25 uc010cdk.4:25 uc059vbw.1:25 uc002eno.4:25 AK296415:25 AK316089:25 AK299949:25 AK131248:25 AB044944:25 AB044945:25 ENST00000562731.5:27 ENST00000566585.5:27 ENST00000564960.1:27 uc059vbx.1:27 uc059vby.1:27 uc059vbz.1:27 ENST00000568424.1:28 uc059vca.1:28 BC011795:37 ENST00000566192.5:-39 uc002enp.4:-39 AB033006:39 AL136584:39 BC001527:41 AF308608:42 AB385436:131 AM393094:131 AM393323:131 KJ903114:131 KU178760:131 KU178761:131
 
|all_trans=ENST00000565088.5:0 ENST00000568640.5:0 uc059vbq.1:0 uc010vii.3:0 AK055038:24 ENST00000563317.5:25 ENST00000568464.5:25 ENST00000563022.5:25 ENST00000562930.5:25 ENST00000563978.5:25 ENST00000569923.5:25 ENST00000356752.8:25 ENST00000563799.5:25 ENST00000562999.5:25 ENST00000570248.5:25 NM_001242834:25 NR_040072:25 NM_001242836:25 NM_001242835:25 NM_001242833:25 uc059vbr.1:25 uc059vbs.1:25 uc059vbt.1:25 uc059vbu.1:25 uc059vbv.1:25 uc010vih.3:25 uc010vig.3:25 uc010cdk.4:25 uc059vbw.1:25 uc002eno.4:25 AK296415:25 AK316089:25 AK299949:25 AK131248:25 AB044944:25 AB044945:25 ENST00000562731.5:27 ENST00000566585.5:27 ENST00000564960.1:27 uc059vbx.1:27 uc059vby.1:27 uc059vbz.1:27 ENST00000568424.1:28 uc059vca.1:28 BC011795:37 ENST00000566192.5:-39 uc002enp.4:-39 AB033006:39 AL136584:39 BC001527:41 AF308608:42 AB385436:131 AM393094:131 AM393323:131 KJ903114:131 KU178760:131 KU178761:131
 
|chr=chr16
 
|chr=chr16
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|distance_to_tss=-41
 
|distance_to_tss=-41
 
|end=58500118
 
|end=58500118
 +
|end_of_center_position=58500102
 
|entrez_id=65009
 
|entrez_id=65009
 
|gc_percent=0.646766
 
|gc_percent=0.646766
−
|gene_alias=BDM1|SMAP-8|SMAP8
+
|gene_alias=BDM1
 
|gene_description=NDRG family member 4
 
|gene_description=NDRG family member 4
 
|gene_id=65009
 
|gene_id=65009
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|species=human
 
|species=human
 
|start=58500085
 
|start=58500085
 +
|start_of_center_position=58500101
 
|strand=+
 
|strand=+
 
|tata_box="9(CTGTATAAATGG,-,0.00)"
 
|tata_box="9(CTGTATAAATGG,-,0.00)"

Revision as of 19:58, 14 May 2019

Basic information about the TSS

TSS ID:hg_226395.1
Species:human
Chr:chr16
TSS Classification:yes
Start:58500085
End:58500118
Strand:+
TSS Score:1
Start of the center position in the TSS region:58500101
End of the center position in the TSS region:58500102



Gene and protein annotation

Transcript_name:ENST00000565088.5 ENST00000568640.5 uc059vbq.1 uc010vii.3
Distance:0
GeneID:65009
HGNC/MGI_ID:HGNC:14466
UniProt_ID:H3BU08 Q9ULP0
Gene_name:NDRG family member 4
Gene_symbol:NDRG4
Gene_synonyms:KIAA1180 SMAP-8
Gene_source:HGNC:14466



Transcript annotation

Transcript_name:ENST00000565088.5 ENST00000568640.5 uc059vbq.1 uc010vii.3
Distance:0
Num_trans:57
All_trans:ENST00000565088.5:0 ENST00000568640.5:0 uc059vbq.1:0 uc010vii.3:0 AK055038:24 ENST00000563317.5:25 ENST00000568464.5:25 ENST00000563022.5:25 ENST00000562930.5:25 ENST00000563978.5:25 ENST00000569923.5:25 ENST00000356752.8:25 ENST00000563799.5:25 ENST00000562999.5:25 ENST00000570248.5:25 NM_001242834:25 NR_040072:25 NM_001242836:25 NM_001242835:25 NM_001242833:25 uc059vbr.1:25 uc059vbs.1:25 uc059vbt.1:25 uc059vbu.1:25 uc059vbv.1:25 uc010vih.3:25 uc010vig.3:25 uc010cdk.4:25 uc059vbw.1:25 uc002eno.4:25 AK296415:25 AK316089:25 AK299949:25 AK131248:25 AB044944:25 AB044945:25 ENST00000562731.5:27 ENST00000566585.5:27 ENST00000564960.1:27 uc059vbx.1:27 uc059vby.1:27 uc059vbz.1:27 ENST00000568424.1:28 uc059vca.1:28 BC011795:37 ENST00000566192.5:-39 uc002enp.4:-39 AB033006:39 AL136584:39 BC001527:41 AF308608:42 AB385436:131 AM393094:131 AM393323:131 KJ903114:131 KU178760:131 KU178761:131



TATA-Box annotation

Distance to TSS:-41
Nearest PromoterID:NM_001242835
Entrez ID:65009
Nearest Unigene:Hs.322430
Nearest Refseq:NM_020465
Nearest Ensembl:ENSG00000103034
Gene Name:NDRG family member 4
Gene Alias:BDM1
Gene Description:NDRG family member 4
Gene Type:protein-coding
CpG%:0.03
GC%:0.646766
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"9(CTGTATAAATGG,-,0.00)"
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