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Difference between revisions of "TSS:Hg 243230.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=AY208841:12 AY208838:14 BC001628:14 AJ565853:-42 AJ565854:-42 AJ565855:-42 AJ575566:-42 AB603741:43 LF354211:58 MA589788:58 ENST00000673211.1:-179 ENST00000672615.1:-179 ENST00000673485.1:-179 ENST00000672476.1:-179 ENST00000673171.1:-179 ENST00000672152.1:-179 AK000164:-179 AY302067:-179 AY302068:-179 AY302069:-179 AY302070:-179 AY302071:-179 AY302072:-179 AY302073:-179 AY302074:-179
+
|all_trans=HGNC:15984
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0
 
|cpg_percent=0
Line 22: Line 22:
 
|nearest_refseq=NM_019607
 
|nearest_refseq=NM_019607
 
|nearest_unigene=Hs.661238
 
|nearest_unigene=Hs.661238
−
|num_trans=25
+
|num_trans=54840
 
|species=human
 
|species=human
 
|start=32989908
 
|start=32989908

Latest revision as of 15:04, 21 July 2021

Basic information about the TSS

TSS ID:hg_243230.1
Species:human
Chr:chr9
TSS Classification:no
Start:32989908
End:32989909
Strand:-
TSS Score:1
Start of the center position in the TSS region:32989908
End of the center position in the TSS region:32989909



Gene and protein annotation

Transcript_name:AY208841
Distance:12
GeneID:54840
HGNC/MGI_ID:HGNC:15984
UniProt_ID:
Gene_name:aprataxin
Gene_symbol:APTX
Gene_synonyms:AOA AOA1 EAOH EOAHA FLJ20157
Gene_source:HGNC:15984



Transcript annotation

Transcript_name:AY208841
Distance:12
Num_trans:54840
All_trans:HGNC:15984



TATA-Box annotation

Distance to TSS:8549
Nearest PromoterID:NR_161217
Entrez ID:56260
Nearest Unigene:Hs.661238
Nearest Refseq:NM_019607
Nearest Ensembl:ENSG00000213865
Gene Name:aprataxin
Gene Alias:-
Gene Description:chromosome 8 open reading frame 44
Gene Type:ncRNA
CpG%:0
GC%:0.348259
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-95(GCTTTTAGGGTG,+,0.00)
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