Difference between revisions of "TSS:Hg 233231.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TRIM5alpha= | ||
|all_trans=AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 uc057yib.1:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 uc057yig.1:162 ENST00000483835.5:236 uc057yid.1:236 ENST00000465634.5:260 uc057yif.1:260 ENST00000438025.5:286 uc057yic.1:286 | |all_trans=AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 uc057yib.1:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 uc057yig.1:162 ENST00000483835.5:236 uc057yid.1:236 ENST00000465634.5:260 uc057yif.1:260 ENST00000438025.5:286 uc057yic.1:286 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=5016 | |distance_to_tss=5016 | ||
|end=5680093 | |end=5680093 | ||
| + | |end_of_center_position=5820243 | ||
|entrez_id=85363 | |entrez_id=85363 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=RNF88 | + | |gene_alias=RNF88 |
|gene_description=tripartite motif containing 5 | |gene_description=tripartite motif containing 5 | ||
|gene_id=85363 | |gene_id=85363 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=5680092 | |start=5680092 | ||
| + | |start_of_center_position=5820242 | ||
|strand=- | |strand=- | ||
|transcript_name=AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 | |transcript_name=AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 | ||
Revision as of 12:48, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 5820242 |
|---|---|
| End of the center position in the TSS region: | 5820243 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB362928 AY625000 DQ288685 HQ447250 KJ899863 KR710559 KR710560 CU676898 |
|---|---|
| Distance: | -84 |
| Num_trans: | 25 |
| All_trans: | AB362928:-84 AY625000:-84 DQ288685:-84 HQ447250:-84 KJ899863:-84 KR710559:-84 KR710560:-84 CU676898:-84 JF928462:-98 JF928461:-98 ENST00000433961.5:-139 uc057yib.1:-139 AF220028:-139 AF220025:-139 AF220029:-139 AF220026:-139 AF220027:-139 ENST00000487241.1:162 uc057yig.1:162 ENST00000483835.5:236 uc057yid.1:236 ENST00000465634.5:260 uc057yif.1:260 ENST00000438025.5:286 uc057yic.1:286 |
TATA-Box annotation
| Distance to TSS: | 5016 |
|---|---|
| Nearest PromoterID: | NM_033093 |
| Entrez ID: | 85363 |
| Nearest Unigene: | Hs.125300 |
| Nearest Refseq: | NM_033034 |
| Nearest Ensembl: | ENSG00000132256 |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | RNF88 |
| Gene Description: | tripartite motif containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
