Difference between revisions of "TSS:Hg 233562.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=CU675898:-188 |chr=chr11 |cpg_percent=0.035 |distance=-188 |distance_to_tss=3179 |end=67398728 |entrez_id=5499 |gc_percent=0.562189 |gene_alias=PP-1A|PP...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |PP1A= | ||
| + | |PP1alpha= | ||
| + | |PPP1A= | ||
|all_trans=CU675898:-188 | |all_trans=CU675898:-188 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=3179 | |distance_to_tss=3179 | ||
|end=67398728 | |end=67398728 | ||
| + | |end_of_center_position=169795274 | ||
|entrez_id=5499 | |entrez_id=5499 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=PP-1A | + | |gene_alias=PP-1A |
|gene_description=protein phosphatase 1 catalytic subunit alpha | |gene_description=protein phosphatase 1 catalytic subunit alpha | ||
|gene_name=PPP1CA | |gene_name=PPP1CA | ||
| Line 19: | Line 23: | ||
|species=human | |species=human | ||
|start=67398723 | |start=67398723 | ||
| + | |start_of_center_position=169795273 | ||
|strand=+ | |strand=+ | ||
|tata_box="-84(GGATCTAAAAGA,-,0.00)" | |tata_box="-84(GGATCTAAAAGA,-,0.00)" | ||
Revision as of 12:46, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 169795273 |
|---|---|
| End of the center position in the TSS region: | 169795274 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU675898 |
|---|---|
| Distance: | -188 |
| Num_trans: | 1 |
| All_trans: | CU675898:-188 |
TATA-Box annotation
| Distance to TSS: | 3179 |
|---|---|
| Nearest PromoterID: | NM_001008709 |
| Entrez ID: | 5499 |
| Nearest Unigene: | Hs.183994 |
| Nearest Refseq: | NM_002708 |
| Nearest Ensembl: | ENSG00000172531 |
| Gene Name: | PPP1CA |
| Gene Alias: | PP-1A |
| Gene Description: | protein phosphatase 1 catalytic subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-84(GGATCTAAAAGA,-,0.00)" |
