Difference between revisions of "TSS:Hg 236288.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000394279.6:21 NM_022910:21 uc010vif.3:21 ENST00000565434.5:-27 uc059vbl.1:-27 ENST00000564486.5:241 uc059vbm.1:241 CR936733:-396 ENST00000566061....") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMAP-8= | ||
| + | |SMAP8= | ||
|all_trans=ENST00000394279.6:21 NM_022910:21 uc010vif.3:21 ENST00000565434.5:-27 uc059vbl.1:-27 ENST00000564486.5:241 uc059vbm.1:241 CR936733:-396 ENST00000566061.5:-483 uc059vbk.1:-483 AK126574:-483 ENST00000566041.5:-488 uc059vbj.1:-488 ENST00000565430.5:-495 ENST00000567063.5:-495 uc059vbh.1:-495 uc059vbi.1:-495 ENST00000561779.5:-497 uc059vbg.1:-497 ENST00000569578.5:-500 ENST00000421602.6:-500 uc059vbe.1:-500 uc059vbf.1:-500 AK126729:-500 | |all_trans=ENST00000394279.6:21 NM_022910:21 uc010vif.3:21 ENST00000565434.5:-27 uc059vbl.1:-27 ENST00000564486.5:241 uc059vbm.1:241 CR936733:-396 ENST00000566061.5:-483 uc059vbk.1:-483 AK126574:-483 ENST00000566041.5:-488 uc059vbj.1:-488 ENST00000565430.5:-495 ENST00000567063.5:-495 uc059vbh.1:-495 uc059vbi.1:-495 ENST00000561779.5:-497 uc059vbg.1:-497 ENST00000569578.5:-500 ENST00000421602.6:-500 uc059vbe.1:-500 uc059vbf.1:-500 AK126729:-500 | ||
|chr=chr16 | |chr=chr16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-21 | |distance_to_tss=-21 | ||
|end=58464801 | |end=58464801 | ||
| + | |end_of_center_position=75204148 | ||
|entrez_id=65009 | |entrez_id=65009 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| − | |gene_alias=BDM1 | + | |gene_alias=BDM1 |
|gene_description=NDRG family member 4 | |gene_description=NDRG family member 4 | ||
|gene_id=65009 | |gene_id=65009 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=58464800 | |start=58464800 | ||
| + | |start_of_center_position=75204147 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000394279.6 NM_022910 uc010vif.3 | |transcript_name=ENST00000394279.6 NM_022910 uc010vif.3 | ||
Revision as of 21:06, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 75204147 |
|---|---|
| End of the center position in the TSS region: | 75204148 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000394279.6 NM_022910 uc010vif.3 |
|---|---|
| Distance: | 21 |
| Num_trans: | 24 |
| All_trans: | ENST00000394279.6:21 NM_022910:21 uc010vif.3:21 ENST00000565434.5:-27 uc059vbl.1:-27 ENST00000564486.5:241 uc059vbm.1:241 CR936733:-396 ENST00000566061.5:-483 uc059vbk.1:-483 AK126574:-483 ENST00000566041.5:-488 uc059vbj.1:-488 ENST00000565430.5:-495 ENST00000567063.5:-495 uc059vbh.1:-495 uc059vbi.1:-495 ENST00000561779.5:-497 uc059vbg.1:-497 ENST00000569578.5:-500 ENST00000421602.6:-500 uc059vbe.1:-500 uc059vbf.1:-500 AK126729:-500 |
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NM_022910 |
| Entrez ID: | 65009 |
| Nearest Unigene: | Hs.322430 |
| Nearest Refseq: | NM_020465 |
| Nearest Ensembl: | ENSG00000103034 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | BDM1 |
| Gene Description: | NDRG family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
