Difference between revisions of "TSS:Hg 237783.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000550671.1:111 uc061auu.1:111 ENST00000551749.5:112 ENST00000552705.5:112 uc061aum.1:112 uc061aus.1:112 ENST00000552588.5:114 uc031rlq.2:114 ENST...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SK-2= | ||
| + | |SPK 2= | ||
| + | |SPK-2= | ||
|all_trans=ENST00000550671.1:111 uc061auu.1:111 ENST00000551749.5:112 ENST00000552705.5:112 uc061aum.1:112 uc061aus.1:112 ENST00000552588.5:114 uc031rlq.2:114 ENST00000549273.5:118 uc061auq.1:118 ENST00000549370.5:119 uc061aup.1:119 AK026558:119 BC021743:119 AK293386:119 D28461:119 ENST00000547892.1:120 uc061aun.1:120 AK091257:120 NR_073022:-123 NM_000979:-123 NM_001270490:-123 ENST00000547897.5:127 uc061aui.1:127 ENST00000552851.1:131 uc061aut.1:131 BC009708:131 BC051359:131 BC051837:131 ENST00000552347.5:132 ENST00000550645.5:132 uc061auh.1:132 uc061aul.1:132 L11566:137 ENST00000550973.5:168 uc061aur.1:168 ENST00000549920.5:-241 uc002pjq.3:-241 | |all_trans=ENST00000550671.1:111 uc061auu.1:111 ENST00000551749.5:112 ENST00000552705.5:112 uc061aum.1:112 uc061aus.1:112 ENST00000552588.5:114 uc031rlq.2:114 ENST00000549273.5:118 uc061auq.1:118 ENST00000549370.5:119 uc061aup.1:119 AK026558:119 BC021743:119 AK293386:119 D28461:119 ENST00000547892.1:120 uc061aun.1:120 AK091257:120 NR_073022:-123 NM_000979:-123 NM_001270490:-123 ENST00000547897.5:127 uc061aui.1:127 ENST00000552851.1:131 uc061aut.1:131 BC009708:131 BC051359:131 BC051837:131 ENST00000552347.5:132 ENST00000550645.5:132 uc061auh.1:132 uc061aul.1:132 L11566:137 ENST00000550973.5:168 uc061aur.1:168 ENST00000549920.5:-241 uc002pjq.3:-241 | ||
|chr=chr19 | |chr=chr19 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
|end=48619295 | |end=48619295 | ||
| + | |end_of_center_position=55771941 | ||
|entrez_id=56848 | |entrez_id=56848 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=SK | + | |gene_alias=SK 2 |
|gene_description=sphingosine kinase 2 | |gene_description=sphingosine kinase 2 | ||
|gene_id=6141 | |gene_id=6141 | ||
| Line 24: | Line 28: | ||
|species=human | |species=human | ||
|start=48619294 | |start=48619294 | ||
| + | |start_of_center_position=55771940 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000550671.1 uc061auu.1 | |transcript_name=ENST00000550671.1 uc061auu.1 | ||
Revision as of 04:22, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 55771940 |
|---|---|
| End of the center position in the TSS region: | 55771941 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000550671.1 uc061auu.1 |
|---|---|
| Distance: | 111 |
| Num_trans: | 38 |
| All_trans: | ENST00000550671.1:111 uc061auu.1:111 ENST00000551749.5:112 ENST00000552705.5:112 uc061aum.1:112 uc061aus.1:112 ENST00000552588.5:114 uc031rlq.2:114 ENST00000549273.5:118 uc061auq.1:118 ENST00000549370.5:119 uc061aup.1:119 AK026558:119 BC021743:119 AK293386:119 D28461:119 ENST00000547892.1:120 uc061aun.1:120 AK091257:120 NR_073022:-123 NM_000979:-123 NM_001270490:-123 ENST00000547897.5:127 uc061aui.1:127 ENST00000552851.1:131 uc061aut.1:131 BC009708:131 BC051359:131 BC051837:131 ENST00000552347.5:132 ENST00000550645.5:132 uc061auh.1:132 uc061aul.1:132 L11566:137 ENST00000550973.5:168 uc061aur.1:168 ENST00000549920.5:-241 uc002pjq.3:-241 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001204158 |
| Entrez ID: | 56848 |
| Nearest Unigene: | Hs.528006 |
| Nearest Refseq: | NM_020126 |
| Nearest Ensembl: | ENSG00000063176 |
| Gene Name: | ribosomal protein L18 |
| Gene Alias: | SK 2 |
| Gene Description: | sphingosine kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
