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Difference between revisions of "TSS:Hg 238263.1"

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(Created page with "{{TSSDetail |all_trans=ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-3...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|CT27=
 +
|CTCF-T=
 +
|HMGB1L1=
 
|all_trans=ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 uc010gix.2:-33 uc061xym.1:-33 uc061xyn.1:-33 uc010gjh.2:-33 uc021wfe.2:-33 uc061xyo.1:-33 uc010gjk.3:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269050:-273 NM_001269055:-273 uc010giw.2:-273 uc010gjf.4:-273 uc010gjg.5:-273 uc010gji.3:-273 uc031rui.2:-273 uc061xyp.1:-273 uc021wff.2:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 AK313990:-306 ENST00000243914.7:-375 uc010gjb.3:-375 AK128070:-375
 
|all_trans=ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 uc010gix.2:-33 uc061xym.1:-33 uc061xyn.1:-33 uc010gjh.2:-33 uc021wfe.2:-33 uc061xyo.1:-33 uc010gjk.3:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269050:-273 NM_001269055:-273 uc010giw.2:-273 uc010gjf.4:-273 uc010gjg.5:-273 uc010gji.3:-273 uc031rui.2:-273 uc061xyp.1:-273 uc021wff.2:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 AK313990:-306 ENST00000243914.7:-375 uc010gjb.3:-375 AK128070:-375
 
|chr=chr20
 
|chr=chr20
 
|cpg_percent=0.05
 
|cpg_percent=0.05
 +
|dJ579F20.2=
 
|distance=-33
 
|distance=-33
 
|distance_to_tss=33
 
|distance_to_tss=33
 
|end=57524834
 
|end=57524834
 +
|end_of_center_position=26170734
 
|entrez_id=140690
 
|entrez_id=140690
 
|gc_percent=0.711443
 
|gc_percent=0.711443
−
|gene_alias=BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2
+
|gene_alias=BORIS
 
|gene_description=CCCTC-binding factor like
 
|gene_description=CCCTC-binding factor like
 
|gene_id=140690
 
|gene_id=140690
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|species=human
 
|species=human
 
|start=57524833
 
|start=57524833
 +
|start_of_center_position=26170733
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 uc010gix.2 uc061xym.1 uc061xyn.1 uc010gjh.2 uc021wfe.2 uc061xyo.1 uc010gjk.3 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
 
|transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 uc010gix.2 uc061xym.1 uc061xyn.1 uc010gjh.2 uc021wfe.2 uc061xyo.1 uc010gjk.3 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114

Revision as of 15:29, 12 May 2019

Basic information about the TSS

TSS ID:hg_238263.1
Species:human
Chr:chr20
TSS Classification:yes
Start:57524833
End:57524834
Strand:-
TSS Score:1
Start of the center position in the TSS region:26170733
End of the center position in the TSS region:26170734



Gene and protein annotation

Transcript_name:ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 uc010gix.2 uc061xym.1 uc061xyn.1 uc010gjh.2 uc021wfe.2 uc061xyo.1 uc010gjk.3 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
Distance:-33
GeneID:140690
HGNC/MGI_ID:HGNC:16234
UniProt_ID:A6XGM4 A6XGM5 F5H2V8 Q8NI51 V9GYX4 V9GZ46
Gene_name:CCCTC-binding factor like
Gene_symbol:CTCFL
Gene_synonyms:BORIS CT27 dJ579F20.2
Gene_source:HGNC:16234



Transcript annotation

Transcript_name:ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 uc010gix.2 uc061xym.1 uc061xyn.1 uc010gjh.2 uc021wfe.2 uc061xyo.1 uc010gjk.3 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
Distance:-33
Num_trans:61
All_trans:ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 uc010gix.2:-33 uc061xym.1:-33 uc061xyn.1:-33 uc010gjh.2:-33 uc021wfe.2:-33 uc061xyo.1:-33 uc010gjk.3:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269050:-273 NM_001269055:-273 uc010giw.2:-273 uc010gjf.4:-273 uc010gjg.5:-273 uc010gji.3:-273 uc031rui.2:-273 uc061xyp.1:-273 uc021wff.2:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 AK313990:-306 ENST00000243914.7:-375 uc010gjb.3:-375 AK128070:-375



TATA-Box annotation

Distance to TSS:33
Nearest PromoterID:NM_001269041
Entrez ID:140690
Nearest Unigene:Hs.131543
Nearest Refseq:NM_080618
Nearest Ensembl:ENSG00000124092
Gene Name:CCCTC-binding factor like
Gene Alias:BORIS
Gene Description:CCCTC-binding factor like
Gene Type:protein-coding
CpG%:0.05
GC%:0.711443
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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