Difference between revisions of "TSS:Hg 243739.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |HPE7= | ||
| + | |NBCCS= | ||
| + | |PTC= | ||
| + | |PTC1= | ||
| + | |PTCH= | ||
| + | |PTCH11= | ||
|all_trans=NM_000264:-70 BC152919:117 AB527342:117 U59464:118 ENST00000331920.10:-182 uc004avk.5:-182 ENST00000421141.5:439 ENST00000547672.5:439 ENST00000546820.5:439 NM_001083605:439 NM_001083604:439 uc010mrq.4:439 uc064umu.1:439 uc064umv.1:439 AB189438:439 AB189439:439 | |all_trans=NM_000264:-70 BC152919:117 AB527342:117 U59464:118 ENST00000331920.10:-182 uc004avk.5:-182 ENST00000421141.5:439 ENST00000547672.5:439 ENST00000546820.5:439 NM_001083605:439 NM_001083604:439 uc010mrq.4:439 uc064umu.1:439 uc064umv.1:439 AB189438:439 AB189439:439 | ||
|chr=chr9 | |chr=chr9 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=70 | |distance_to_tss=70 | ||
|end=95508479 | |end=95508479 | ||
| + | |end_of_center_position=12977096 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 24: | Line 31: | ||
|species=human | |species=human | ||
|start=95508478 | |start=95508478 | ||
| + | |start_of_center_position=12977095 | ||
|strand=- | |strand=- | ||
|transcript_name=NM_000264 | |transcript_name=NM_000264 | ||
Revision as of 18:15, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 12977095 |
|---|---|
| End of the center position in the TSS region: | 12977096 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_000264 |
|---|---|
| Distance: | -70 |
| Num_trans: | 16 |
| All_trans: | NM_000264:-70 BC152919:117 AB527342:117 U59464:118 ENST00000331920.10:-182 uc004avk.5:-182 ENST00000421141.5:439 ENST00000547672.5:439 ENST00000546820.5:439 NM_001083605:439 NM_001083604:439 uc010mrq.4:439 uc064umu.1:439 uc064umv.1:439 AB189438:439 AB189439:439 |
TATA-Box annotation
| Distance to TSS: | 70 |
|---|---|
| Nearest PromoterID: | NM_000264 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
