Difference between revisions of "TSS:Hg 115560.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=37 |entrez_id=51083 |gc_percent=0.78607 |gene_alias=ETL8|GAL-GMAP|GALN|GLNN|GMAP |gene_description=galanin and GMAP prepropeptid...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GAL-GMAP= | ||
| + | |GALN= | ||
| + | |GLNN= | ||
| + | |GMAP= | ||
| + | |all_trans=ENST00000265643.3:-31 NM_015973:-31 uc001oob.4:-31 BC030241:49 CU688860:406 KJ898820:406 M77140:454 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=-31 | ||
|distance_to_tss=37 | |distance_to_tss=37 | ||
| + | |end=68684518 | ||
|entrez_id=51083 | |entrez_id=51083 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=ETL8|GAL-GMAP|GALN|GLNN|GMAP | |gene_alias=ETL8|GAL-GMAP|GALN|GLNN|GMAP | ||
|gene_description=galanin and GMAP prepropeptide | |gene_description=galanin and GMAP prepropeptide | ||
| − | |gene_name=GAL | + | |gene_id=51083 |
| + | |gene_name=galanin/GMAP prepropeptide | ||
| + | |gene_source=HGNC:4114 | ||
| + | |gene_symbol=GAL | ||
| + | |gene_synonyms=GAL-GMAP GLNN GMAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4114 | ||
|nearest_ensembl=ENSG00000069482 | |nearest_ensembl=ENSG00000069482 | ||
|nearest_promoter_id=NM_015973 | |nearest_promoter_id=NM_015973 | ||
|nearest_refseq=NM_015973 | |nearest_refseq=NM_015973 | ||
|nearest_unigene=Hs.278959 | |nearest_unigene=Hs.278959 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=68684505 | ||
| + | |strand=+ | ||
|tata_box="-1(GCATATATAGCA,+,0.00)" | |tata_box="-1(GCATATATAGCA,+,0.00)" | ||
| + | |transcript_name=ENST00000265643.3 NM_015973 uc001oob.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_115560.1 | |tss_id=hg_115560.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P22466 | ||
}} | }} | ||
Revision as of 04:48, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000265643.3 NM_015973 uc001oob.4 |
|---|---|
| Distance: | -31 |
| Num_trans: | 7 |
| All_trans: | ENST00000265643.3:-31 NM_015973:-31 uc001oob.4:-31 BC030241:49 CU688860:406 KJ898820:406 M77140:454 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_015973 |
| Entrez ID: | 51083 |
| Nearest Unigene: | Hs.278959 |
| Nearest Refseq: | NM_015973 |
| Nearest Ensembl: | ENSG00000069482 |
| Gene Name: | galanin/GMAP prepropeptide |
| Gene Alias: | ETL8 |
| Gene Description: | galanin and GMAP prepropeptide |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-1(GCATATATAGCA,+,0.00)" |
