Difference between revisions of "TSS:Hg 117850.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=52 |entrez_id=66005 |gc_percent=0.751244 |gene_alias=GL008|SI-CLP|SICLP |gene_description=chitinase domain containing 1 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SI-CLP= | ||
| + | |SICLP= | ||
| + | |all_trans=ENST00000429789.6:0 ENST00000528581.5:0 ENST00000436108.6:0 ENST00000530939.5:0 ENST00000525225.1:0 uc001lsp.4:0 uc001lsn.4:0 uc001lso.4:0 uc057xqj.1:0 uc057xqk.1:0 BC095409:0 AK027711:0 AF212229:0 AY037151:0 AK075413:0 AK225025:0 AK297743:0 BC000001:3 AK225398:4 ENST00000528426.5:6 uc057xqg.1:6 NM_001142677:-27 NM_001142676:-27 NM_001142674:-27 NM_023947:-27 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=52 | |distance_to_tss=52 | ||
| + | |end=910847 | ||
|entrez_id=66005 | |entrez_id=66005 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=GL008|SI-CLP|SICLP | |gene_alias=GL008|SI-CLP|SICLP | ||
|gene_description=chitinase domain containing 1 | |gene_description=chitinase domain containing 1 | ||
| − | |gene_name=CHID1 | + | |gene_id=66005 |
| + | |gene_name=chitinase domain containing 1 | ||
| + | |gene_source=HGNC:28474 | ||
| + | |gene_symbol=CHID1 | ||
| + | |gene_synonyms=FLJ42707 MGC3234 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28474 | ||
|nearest_ensembl=ENSG00000177830 | |nearest_ensembl=ENSG00000177830 | ||
|nearest_promoter_id=NM_001142677 | |nearest_promoter_id=NM_001142677 | ||
|nearest_refseq=NM_023947 | |nearest_refseq=NM_023947 | ||
|nearest_unigene=Hs.144468 | |nearest_unigene=Hs.144468 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=910796 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000429789.6 ENST00000528581.5 ENST00000436108.6 ENST00000530939.5 ENST00000525225.1 uc001lsp.4 uc001lsn.4 uc001lso.4 uc057xqj.1 uc057xqk.1 BC095409 AK027711 AF212229 AY037151 AK075413 AK225025 AK297743 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_117850.1 | |tss_id=hg_117850.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DN31 E9PI70 E9PKF1 Q9BWS9 | ||
}} | }} | ||
Revision as of 06:25, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000429789.6 ENST00000528581.5 ENST00000436108.6 ENST00000530939.5 ENST00000525225.1 uc001lsp.4 uc001lsn.4 uc001lso.4 uc057xqj.1 uc057xqk.1 BC095409 AK027711 AF212229 AY037151 AK075413 AK225025 AK297743 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000429789.6:0 ENST00000528581.5:0 ENST00000436108.6:0 ENST00000530939.5:0 ENST00000525225.1:0 uc001lsp.4:0 uc001lsn.4:0 uc001lso.4:0 uc057xqj.1:0 uc057xqk.1:0 BC095409:0 AK027711:0 AF212229:0 AY037151:0 AK075413:0 AK225025:0 AK297743:0 BC000001:3 AK225398:4 ENST00000528426.5:6 uc057xqg.1:6 NM_001142677:-27 NM_001142676:-27 NM_001142674:-27 NM_023947:-27 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_001142677 |
| Entrez ID: | 66005 |
| Nearest Unigene: | Hs.144468 |
| Nearest Refseq: | NM_023947 |
| Nearest Ensembl: | ENSG00000177830 |
| Gene Name: | chitinase domain containing 1 |
| Gene Alias: | GL008 |
| Gene Description: | chitinase domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
