Difference between revisions of "TSS:Hg 118265.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=72 |entrez_id=4676 |gc_percent=0.726368 |gene_alias=NAP1L4b|NAP2|NAP2L|hNAP2 |gene_description=nucleosome assembly protein 1 li...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |NAP2= | ||
| + | |NAP2L= | ||
| + | |all_trans=ENST00000532325.6:0 ENST00000448187.5:0 ENST00000399614.6:0 uc057xzq.1:0 uc057xzr.1:0 uc057xzs.1:0 BC022090:0 AK316548:0 AK316242:0 AK316324:0 AK299515:0 ENST00000526842.5:6 uc057xzx.1:6 ENST00000531291.5:9 uc057xzy.1:9 ENST00000529361.5:10 ENST00000528968.5:10 ENST00000534372.1:10 uc057xzu.1:10 uc057xzv.1:10 uc057yaa.1:10 ENST00000620138.4:-35 ENST00000380542.8:-35 ENST00000526115.5:-35 NM_005969:-35 uc010qxn.3:-35 uc001lxc.4:-35 uc010qxm.3:-35 U77456:-35 AK312599:-42 ENST00000430811.5:166 uc057xzt.1:166 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=72 | |distance_to_tss=72 | ||
| + | |end=2992342 | ||
|entrez_id=4676 | |entrez_id=4676 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=NAP1L4b|NAP2|NAP2L|hNAP2 | |gene_alias=NAP1L4b|NAP2|NAP2L|hNAP2 | ||
|gene_description=nucleosome assembly protein 1 like 4 | |gene_description=nucleosome assembly protein 1 like 4 | ||
| − | |gene_name=NAP1L4 | + | |gene_id=4676 |
| + | |gene_name=nucleosome assembly protein 1 like 4 | ||
| + | |gene_source=HGNC:7640 | ||
| + | |gene_symbol=NAP1L4 | ||
| + | |gene_synonyms=NAP2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hNAP2= | ||
| + | |hgnc_mgi_id=HGNC:7640 | ||
|nearest_ensembl=ENSG00000205531 | |nearest_ensembl=ENSG00000205531 | ||
|nearest_promoter_id=NM_005969 | |nearest_promoter_id=NM_005969 | ||
|nearest_refseq=NM_005969 | |nearest_refseq=NM_005969 | ||
|nearest_unigene=Hs.731784 | |nearest_unigene=Hs.731784 | ||
| + | |num_trans=32 | ||
| + | |species=human | ||
| + | |start=2992267 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000532325.6 ENST00000448187.5 ENST00000399614.6 uc057xzq.1 uc057xzr.1 uc057xzs.1 BC022090 AK316548 AK316242 AK316324 AK299515 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118265.1 | |tss_id=hg_118265.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A8MXH2 B4DS05 B7ZAC7 B7ZAK9 B7ZB83 C9JZI7 E9PP22 | ||
}} | }} | ||
Revision as of 06:43, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000532325.6 ENST00000448187.5 ENST00000399614.6 uc057xzq.1 uc057xzr.1 uc057xzs.1 BC022090 AK316548 AK316242 AK316324 AK299515 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000532325.6:0 ENST00000448187.5:0 ENST00000399614.6:0 uc057xzq.1:0 uc057xzr.1:0 uc057xzs.1:0 BC022090:0 AK316548:0 AK316242:0 AK316324:0 AK299515:0 ENST00000526842.5:6 uc057xzx.1:6 ENST00000531291.5:9 uc057xzy.1:9 ENST00000529361.5:10 ENST00000528968.5:10 ENST00000534372.1:10 uc057xzu.1:10 uc057xzv.1:10 uc057yaa.1:10 ENST00000620138.4:-35 ENST00000380542.8:-35 ENST00000526115.5:-35 NM_005969:-35 uc010qxn.3:-35 uc001lxc.4:-35 uc010qxm.3:-35 U77456:-35 AK312599:-42 ENST00000430811.5:166 uc057xzt.1:166 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_005969 |
| Entrez ID: | 4676 |
| Nearest Unigene: | Hs.731784 |
| Nearest Refseq: | NM_005969 |
| Nearest Ensembl: | ENSG00000205531 |
| Gene Name: | nucleosome assembly protein 1 like 4 |
| Gene Alias: | NAP1L4b |
| Gene Description: | nucleosome assembly protein 1 like 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
