Difference between revisions of "TSS:Hg 118390.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=-8728 |entrez_id=390083 |gc_percent=0.532338 |gene_alias=OR56A2P|OR56A3P|OR56A6 |gene_description=olfactory receptor family 56 s...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |OR56A3P= | ||
| + | |OR56A6= | ||
| + | |all_trans=ENST00000412903.1:0 uc057yih.1:0 BC020770:0 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=0 | ||
|distance_to_tss=-8728 | |distance_to_tss=-8728 | ||
| + | |end=5938627 | ||
|entrez_id=390083 | |entrez_id=390083 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=OR56A2P|OR56A3P|OR56A6 | |gene_alias=OR56A2P|OR56A3P|OR56A6 | ||
|gene_description=olfactory receptor family 56 subfamily A member 3 | |gene_description=olfactory receptor family 56 subfamily A member 3 | ||
| − | |gene_name= | + | |gene_id=85363 |
| + | |gene_name=tripartite motif containing 5 | ||
| + | |gene_source=HGNC:16276 | ||
| + | |gene_symbol=TRIM5 | ||
| + | |gene_synonyms=RNF88 TRIM5alpha | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16276 | ||
|nearest_ensembl=ENSG00000184478 | |nearest_ensembl=ENSG00000184478 | ||
|nearest_promoter_id=NM_001003443 | |nearest_promoter_id=NM_001003443 | ||
|nearest_refseq=NM_001003443 | |nearest_refseq=NM_001003443 | ||
|nearest_unigene=Hs.553741 | |nearest_unigene=Hs.553741 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=5938610 | ||
| + | |strand=- | ||
|tata_box="-33(CCCTTTAAATAC,+,0.00),-33(CCCTTTAAATAC,-,0.00),-31(CTTTAAATACAC,+,0.00)" | |tata_box="-33(CCCTTTAAATAC,+,0.00),-33(CCCTTTAAATAC,-,0.00),-31(CTTTAAATACAC,+,0.00)" | ||
| + | |transcript_name=ENST00000412903.1 uc057yih.1 BC020770 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118390.1 | |tss_id=hg_118390.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E7EQQ5 Q05CU3 | ||
}} | }} | ||
Revision as of 06:48, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000412903.1 uc057yih.1 BC020770 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000412903.1:0 uc057yih.1:0 BC020770:0 |
TATA-Box annotation
| Distance to TSS: | -8728 |
|---|---|
| Nearest PromoterID: | NM_001003443 |
| Entrez ID: | 390083 |
| Nearest Unigene: | Hs.553741 |
| Nearest Refseq: | NM_001003443 |
| Nearest Ensembl: | ENSG00000184478 |
| Gene Name: | tripartite motif containing 5 |
| Gene Alias: | OR56A2P |
| Gene Description: | olfactory receptor family 56 subfamily A member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(CCCTTTAAATAC,+,0.00),-33(CCCTTTAAATAC,-,0.00),-31(CTTTAAATACAC,+,0.00)" |
