Difference between revisions of "TSS:Hg 118492.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=76 |entrez_id=79608 |gc_percent=0.706468 |gene_alias=AYST720|PRO1385 |gene_description=RIC3 acetylcholine receptor chaperone |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PRO1385= | ||
| + | |all_trans=ENST00000335425.7:0 ENST00000309737.10:0 ENST00000526962.1:0 ENST00000528463.5:0 ENST00000425599.6:0 ENST00000531450.1:0 ENST00000419822.2:0 NR_045405:0 NM_001206672:0 NM_001206671:0 NM_001135109:0 NM_024557:0 uc001mge.3:0 uc001mgd.3:0 uc057yrg.1:0 uc057yrj.1:0 uc009yfm.3:0 uc057yrk.1:0 uc001mgf.5:0 AL832601:0 BC022455:0 AY326435:0 BX647514:0 AK293933:0 AK296505:0 AM422214:0 AK315379:0 KJ899542:0 KU178773:0 KU178774:0 KU178775:0 AY358475:0 AY326436:0 ENST00000343202.8:-7 uc001mgc.3:-7 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=76 | |distance_to_tss=76 | ||
| + | |end=8169048 | ||
|entrez_id=79608 | |entrez_id=79608 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=AYST720|PRO1385 | |gene_alias=AYST720|PRO1385 | ||
|gene_description=RIC3 acetylcholine receptor chaperone | |gene_description=RIC3 acetylcholine receptor chaperone | ||
| − | |gene_name=RIC3 | + | |gene_id=79608 |
| + | |gene_name=RIC3 acetylcholine receptor chaperone | ||
| + | |gene_source=HGNC:30338 | ||
| + | |gene_symbol=RIC3 | ||
| + | |gene_synonyms=AYST720 FLJ11608 PRO1385 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30338 | ||
|nearest_ensembl=ENSG00000166405 | |nearest_ensembl=ENSG00000166405 | ||
|nearest_promoter_id=NM_001206671 | |nearest_promoter_id=NM_001206671 | ||
|nearest_refseq=NM_024557 | |nearest_refseq=NM_024557 | ||
|nearest_unigene=Hs.231850 | |nearest_unigene=Hs.231850 | ||
| + | |num_trans=35 | ||
| + | |species=human | ||
| + | |start=8168987 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000335425.7 ENST00000309737.10 ENST00000526962.1 ENST00000528463.5 ENST00000425599.6 ENST00000531450.1 ENST00000419822.2 NR_045405 NM_001206672 NM_001206671 NM_001135109 NM_024557 uc001mge.3 uc001mgd.3 uc057yrg.1 uc057yrj.1 uc009yfm.3 uc057yrk.1 uc001mgf.5 AL832601 BC022455 AY326435 BX647514 AK293933 AK296505 AM422214 AK315379 KJ899542 KU178773 KU178774 KU178775 AY358475 AY326436 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_118492.1 | |tss_id=hg_118492.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0S2Z5U4 A0A0S2Z607 A0A0S2Z6D3 B7Z1U4 B7Z3Z0 E9PK46 E9PKX8 E9PNI0 Q7Z5B4 | ||
}} | }} | ||
Revision as of 06:53, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000335425.7 ENST00000309737.10 ENST00000526962.1 ENST00000528463.5 ENST00000425599.6 ENST00000531450.1 ENST00000419822.2 NR_045405 NM_001206672 NM_001206671 NM_001135109 NM_024557 uc001mge.3 uc001mgd.3 uc057yrg.1 uc057yrj.1 uc009yfm.3 uc057yrk.1 uc001mgf.5 AL832601 BC022455 AY326435 BX647514 AK293933 AK296505 AM422214 AK315379 KJ899542 KU178773 KU178774 KU178775 AY358475 AY326436 |
|---|---|
| Distance: | 0 |
| Num_trans: | 35 |
| All_trans: | ENST00000335425.7:0 ENST00000309737.10:0 ENST00000526962.1:0 ENST00000528463.5:0 ENST00000425599.6:0 ENST00000531450.1:0 ENST00000419822.2:0 NR_045405:0 NM_001206672:0 NM_001206671:0 NM_001135109:0 NM_024557:0 uc001mge.3:0 uc001mgd.3:0 uc057yrg.1:0 uc057yrj.1:0 uc009yfm.3:0 uc057yrk.1:0 uc001mgf.5:0 AL832601:0 BC022455:0 AY326435:0 BX647514:0 AK293933:0 AK296505:0 AM422214:0 AK315379:0 KJ899542:0 KU178773:0 KU178774:0 KU178775:0 AY358475:0 AY326436:0 ENST00000343202.8:-7 uc001mgc.3:-7 |
TATA-Box annotation
| Distance to TSS: | 76 |
|---|---|
| Nearest PromoterID: | NM_001206671 |
| Entrez ID: | 79608 |
| Nearest Unigene: | Hs.231850 |
| Nearest Refseq: | NM_024557 |
| Nearest Ensembl: | ENSG00000166405 |
| Gene Name: | RIC3 acetylcholine receptor chaperone |
| Gene Alias: | AYST720 |
| Gene Description: | RIC3 acetylcholine receptor chaperone |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
