Difference between revisions of "TSS:Hg 11866.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=-45 |entrez_id=8761 |gc_percent=0.80597 |gene_alias=APP-1|APP1|PABP4|iPABP |gene_description=poly(A) binding protein cytoplasmic...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |APP1= | ||
| + | |PABP4= | ||
| + | |all_trans=NM_001135654:44 NM_001135653:44 NM_003819:44 ENST00000451091.2:103 uc057fcc.1:103 BC094755:103 ENST00000531243.2:106 uc057fcd.1:106 BC071591:108 ENST00000372856.7:142 uc001cdm.3:142 BC065540:142 ENST00000372857.7:149 uc010oiv.2:149 U75686:149 ENST00000372858.7:492 uc001cdl.3:492 BC029969:492 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance=44 | ||
|distance_to_tss=-45 | |distance_to_tss=-45 | ||
| + | |end=39576896 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=APP-1|APP1|PABP4|iPABP | |gene_alias=APP-1|APP1|PABP4|iPABP | ||
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
| − | |gene_name=PABPC4 | + | |gene_id=8761 |
| + | |gene_name="poly(A) binding protein, cytoplasmic 4 (inducible form)" | ||
| + | |gene_source=HGNC:8557 | ||
| + | |gene_symbol=PABPC4 | ||
| + | |gene_synonyms=APP-1 iPABP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8557 | ||
| + | |iPABP= | ||
|nearest_ensembl=ENSG00000090621 | |nearest_ensembl=ENSG00000090621 | ||
|nearest_promoter_id=NM_003819 | |nearest_promoter_id=NM_003819 | ||
|nearest_refseq=NM_003819 | |nearest_refseq=NM_003819 | ||
|nearest_unigene=Hs.169900 | |nearest_unigene=Hs.169900 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=39576892 | ||
| + | |strand=- | ||
|tata_box="71(GGGTATAAATGG,-,0.00)" | |tata_box="71(GGGTATAAATGG,-,0.00)" | ||
| + | |transcript_name=NM_001135654 NM_001135653 NM_003819 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_11866.1 | |tss_id=hg_11866.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q13310 | ||
}} | }} | ||
Revision as of 07:00, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001135654 NM_001135653 NM_003819 |
|---|---|
| Distance: | 44 |
| Num_trans: | 18 |
| All_trans: | NM_001135654:44 NM_001135653:44 NM_003819:44 ENST00000451091.2:103 uc057fcc.1:103 BC094755:103 ENST00000531243.2:106 uc057fcd.1:106 BC071591:108 ENST00000372856.7:142 uc001cdm.3:142 BC065540:142 ENST00000372857.7:149 uc010oiv.2:149 U75686:149 ENST00000372858.7:492 uc001cdl.3:492 BC029969:492 |
TATA-Box annotation
| Distance to TSS: | -45 |
|---|---|
| Nearest PromoterID: | NM_003819 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | "poly(A) binding protein, cytoplasmic 4 (inducible form)" |
| Gene Alias: | APP-1 |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "71(GGGTATAAATGG,-,0.00)" |
