Difference between revisions of "TSS:Hg 121145.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=24 |entrez_id=4926 |gc_percent=0.666667 |gene_alias=NMP-22|NUMA |gene_description=nuclear mitotic apparatus protein 1 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NUMA= | ||
| + | |all_trans=ENST00000535111.5:0 uc058eyf.1:0 ENST00000541719.5:2 uc058eyb.1:2 ENST00000537217.5:-6 NR_104476:-6 uc058exp.1:-6 BC103765:-6 ENST00000366394.7:-10 uc058eyc.1:-10 ENST00000540843.5:-26 uc058exq.1:-26 AB210007:-26 BC027493:-26 BC043499:-26 Z11583:-43 AK307577:-43 ENST00000351960.10:44 uc001ork.3:44 BC004165:44 ENST00000358965.10:-47 uc001orm.3:-47 Z11584:-47 ENST00000546131.1:-68 uc058eyh.1:-68 ENST00000543937.5:-74 ENST00000368959.9:-74 ENST00000537905.5:-74 uc058ext.1:-74 uc058eya.1:-74 uc058eye.1:-74 ENST00000541641.5:-86 uc058eyd.1:-86 AB621824:-86 ENST00000393695.7:-219 uc001orl.3:-219 BC068539:-224 ENST00000613205.4:-225 ENST00000543450.1:-225 NM_001286561:-225 NM_006185:-225 uc058exi.1:-225 uc058eyi.1:-225 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=24 | |distance_to_tss=24 | ||
| + | |end=72080468 | ||
|entrez_id=4926 | |entrez_id=4926 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=NMP-22|NUMA | |gene_alias=NMP-22|NUMA | ||
|gene_description=nuclear mitotic apparatus protein 1 | |gene_description=nuclear mitotic apparatus protein 1 | ||
| − | |gene_name=NUMA1 | + | |gene_id=4926 |
| + | |gene_name=nuclear mitotic apparatus protein 1 | ||
| + | |gene_source=HGNC:8059 | ||
| + | |gene_symbol=NUMA1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8059 | ||
|nearest_ensembl=ENSG00000137497 | |nearest_ensembl=ENSG00000137497 | ||
|nearest_promoter_id=NR_104476 | |nearest_promoter_id=NR_104476 | ||
|nearest_refseq=NM_006185 | |nearest_refseq=NM_006185 | ||
|nearest_unigene=Hs.325978 | |nearest_unigene=Hs.325978 | ||
| + | |num_trans=43 | ||
| + | |species=human | ||
| + | |start=72080432 | ||
| + | |strand=- | ||
|tata_box="48(AGGCCTAAAAGG,-,0.00)" | |tata_box="48(AGGCCTAAAAGG,-,0.00)" | ||
| + | |transcript_name=ENST00000535111.5 uc058eyf.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121145.1 | |tss_id=hg_121145.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5GWA2 | ||
}} | }} | ||
Revision as of 08:46, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000535111.5 uc058eyf.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 43 |
| All_trans: | ENST00000535111.5:0 uc058eyf.1:0 ENST00000541719.5:2 uc058eyb.1:2 ENST00000537217.5:-6 NR_104476:-6 uc058exp.1:-6 BC103765:-6 ENST00000366394.7:-10 uc058eyc.1:-10 ENST00000540843.5:-26 uc058exq.1:-26 AB210007:-26 BC027493:-26 BC043499:-26 Z11583:-43 AK307577:-43 ENST00000351960.10:44 uc001ork.3:44 BC004165:44 ENST00000358965.10:-47 uc001orm.3:-47 Z11584:-47 ENST00000546131.1:-68 uc058eyh.1:-68 ENST00000543937.5:-74 ENST00000368959.9:-74 ENST00000537905.5:-74 uc058ext.1:-74 uc058eya.1:-74 uc058eye.1:-74 ENST00000541641.5:-86 uc058eyd.1:-86 AB621824:-86 ENST00000393695.7:-219 uc001orl.3:-219 BC068539:-224 ENST00000613205.4:-225 ENST00000543450.1:-225 NM_001286561:-225 NM_006185:-225 uc058exi.1:-225 uc058eyi.1:-225 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NR_104476 |
| Entrez ID: | 4926 |
| Nearest Unigene: | Hs.325978 |
| Nearest Refseq: | NM_006185 |
| Nearest Ensembl: | ENSG00000137497 |
| Gene Name: | nuclear mitotic apparatus protein 1 |
| Gene Alias: | NMP-22 |
| Gene Description: | nuclear mitotic apparatus protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "48(AGGCCTAAAAGG,-,0.00)" |
