Difference between revisions of "TSS:Hg 121183.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-271 |entrez_id=5138 |gc_percent=0.492537 |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE |gene_description=phosphodiesterase 2A |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PDE2A1= | ||
| + | |PED2A4= | ||
| + | |all_trans=ENST00000540380.5:126 uc058fca.1:126 ENST00000334456.9:264 NM_002599:264 uc010rrc.3:264 ENST00000546038.1:267 uc058fce.1:267 ENST00000542969.2:284 uc058fcd.1:284 ENST00000535701.1:295 uc058fcc.1:295 BC040974:298 AY495088:300 AK312434:301 ENST00000418754.6:309 uc010rrd.3:309 AK295676:309 U67733:349 | ||
| + | |cGSPDE= | ||
| + | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=126 | ||
|distance_to_tss=-271 | |distance_to_tss=-271 | ||
| + | |end=72674732 | ||
|entrez_id=5138 | |entrez_id=5138 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
|gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | |gene_alias=CGS-PDE|PDE2A1|PED2A4|cGSPDE | ||
|gene_description=phosphodiesterase 2A | |gene_description=phosphodiesterase 2A | ||
| − | |gene_name=PDE2A | + | |gene_id=5138 |
| + | |gene_name=phosphodiesterase 2A | ||
| + | |gene_source=HGNC:8777 | ||
| + | |gene_symbol=PDE2A | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8777 | ||
|nearest_ensembl=ENSG00000186642 | |nearest_ensembl=ENSG00000186642 | ||
|nearest_promoter_id=NM_002599 | |nearest_promoter_id=NM_002599 | ||
|nearest_refseq=NM_002599 | |nearest_refseq=NM_002599 | ||
|nearest_unigene=Hs.503163 | |nearest_unigene=Hs.503163 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=72674716 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000540380.5 uc058fca.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_121183.1 | |tss_id=hg_121183.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 08:48, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000540380.5 uc058fca.1 |
|---|---|
| Distance: | 126 |
| Num_trans: | 18 |
| All_trans: | ENST00000540380.5:126 uc058fca.1:126 ENST00000334456.9:264 NM_002599:264 uc010rrc.3:264 ENST00000546038.1:267 uc058fce.1:267 ENST00000542969.2:284 uc058fcd.1:284 ENST00000535701.1:295 uc058fcc.1:295 BC040974:298 AY495088:300 AK312434:301 ENST00000418754.6:309 uc010rrd.3:309 AK295676:309 U67733:349 |
TATA-Box annotation
| Distance to TSS: | -271 |
|---|---|
| Nearest PromoterID: | NM_002599 |
| Entrez ID: | 5138 |
| Nearest Unigene: | Hs.503163 |
| Nearest Refseq: | NM_002599 |
| Nearest Ensembl: | ENSG00000186642 |
| Gene Name: | phosphodiesterase 2A |
| Gene Alias: | CGS-PDE |
| Gene Description: | phosphodiesterase 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
