Difference between revisions of "TSS:Mm 148758.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC019440:-17 AK164029:-24 NM_013859:-31 uc008ggv.1:-31 AK086863:-31 AF119498:-41 ENSMUST00000162726.4:-46 BC092256:-46 |chr=chr19 |cpg_percent=0.105 |di...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Fon= | ||
| + | |ORF6= | ||
| + | |Znhit2-ps= | ||
|all_trans=BC019440:-17 AK164029:-24 NM_013859:-31 uc008ggv.1:-31 AK086863:-31 AF119498:-41 ENSMUST00000162726.4:-46 BC092256:-46 | |all_trans=BC019440:-17 AK164029:-24 NM_013859:-31 uc008ggv.1:-31 AK086863:-31 AF119498:-41 ENSMUST00000162726.4:-46 BC092256:-46 | ||
|chr=chr19 | |chr=chr19 | ||
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|distance_to_tss=38 | |distance_to_tss=38 | ||
|end=6061252 | |end=6061252 | ||
| + | |end_of_center_position=6061245 | ||
|entrez_id=29805 | |entrez_id=29805 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=C11orf5 | + | |gene_alias=C11orf5 |
|gene_description="zinc finger, HIT domain containing 2" | |gene_description="zinc finger, HIT domain containing 2" | ||
|gene_id=29805 | |gene_id=29805 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=6061237 | |start=6061237 | ||
| + | |start_of_center_position=6061244 | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC019440 | |transcript_name=BC019440 | ||
Revision as of 19:40, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 6061244 |
|---|---|
| End of the center position in the TSS region: | 6061245 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC019440 |
|---|---|
| Distance: | -17 |
| Num_trans: | 8 |
| All_trans: | BC019440:-17 AK164029:-24 NM_013859:-31 uc008ggv.1:-31 AK086863:-31 AF119498:-41 ENSMUST00000162726.4:-46 BC092256:-46 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_013859 |
| Entrez ID: | 29805 |
| Nearest Unigene: | Mm.2310 |
| Nearest Refseq: | NM_013859 |
| Nearest Ensembl: | ENSMUSG00000075227 |
| Gene Name: | "zinc finger, HIT domain containing 2" |
| Gene Alias: | C11orf5 |
| Gene Description: | "zinc finger, HIT domain containing 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
