Difference between revisions of "TSS:Hg 10261.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=50 |entrez_id=1676 |gc_percent=0.646766 |gene_alias=DFF-45|DFF1|ICAD |gene_description=DNA fragmentation factor subunit alpha |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DFF1= | ||
| + | |ICAD= | ||
| + | |all_trans=ENST00000377038.7:0 ENST00000476658.5:0 ENST00000377036.2:0 uc001arj.4:0 uc057cdb.1:0 uc001ark.4:0 BC007721:0 BC000037:0 U91985:0 AK222546:0 BC007112:0 AK313317:0 AF087573:0 AF103799:0 BT006980:17 KJ896700:17 AB590590:17 CU675773:17 NM_213566:-19 NM_004401:-19 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=50 | |distance_to_tss=50 | ||
| + | |end=10472537 | ||
|entrez_id=1676 | |entrez_id=1676 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=DFF-45|DFF1|ICAD | |gene_alias=DFF-45|DFF1|ICAD | ||
|gene_description=DNA fragmentation factor subunit alpha | |gene_description=DNA fragmentation factor subunit alpha | ||
| − | |gene_name=DFFA | + | |gene_id=1676 |
| + | |gene_name=DNA fragmentation factor subunit alpha | ||
| + | |gene_source=HGNC:2772 | ||
| + | |gene_symbol=DFFA | ||
| + | |gene_synonyms=DFF-45 DFF1 DFF45 ICAD | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2772 | ||
|nearest_ensembl=ENSG00000160049 | |nearest_ensembl=ENSG00000160049 | ||
|nearest_promoter_id=NM_213566 | |nearest_promoter_id=NM_213566 | ||
|nearest_refseq=NM_004401 | |nearest_refseq=NM_004401 | ||
|nearest_unigene=Hs.484782 | |nearest_unigene=Hs.484782 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=10472474 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000377038.7 ENST00000476658.5 ENST00000377036.2 uc001arj.4 uc057cdb.1 uc001ark.4 BC007721 BC000037 U91985 AK222546 BC007112 AK313317 AF087573 AF103799 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10261.1 | |tss_id=hg_10261.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R4H5 K7ERT1 O00273 Q53HN4 | ||
}} | }} | ||
Revision as of 19:33, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377038.7 ENST00000476658.5 ENST00000377036.2 uc001arj.4 uc057cdb.1 uc001ark.4 BC007721 BC000037 U91985 AK222546 BC007112 AK313317 AF087573 AF103799 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000377038.7:0 ENST00000476658.5:0 ENST00000377036.2:0 uc001arj.4:0 uc057cdb.1:0 uc001ark.4:0 BC007721:0 BC000037:0 U91985:0 AK222546:0 BC007112:0 AK313317:0 AF087573:0 AF103799:0 BT006980:17 KJ896700:17 AB590590:17 CU675773:17 NM_213566:-19 NM_004401:-19 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NM_213566 |
| Entrez ID: | 1676 |
| Nearest Unigene: | Hs.484782 |
| Nearest Refseq: | NM_004401 |
| Nearest Ensembl: | ENSG00000160049 |
| Gene Name: | DNA fragmentation factor subunit alpha |
| Gene Alias: | DFF-45 |
| Gene Description: | DNA fragmentation factor subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
