Difference between revisions of "TSS:Hg 106127.1"
From referenceTSS
| Line 14: | Line 14: | ||
|distance_to_tss=151 | |distance_to_tss=151 | ||
|end=89327975 | |end=89327975 | ||
| + | |end_of_center_position=89327970 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=CIG-49 | + | |gene_alias=CIG-49 |
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
|gene_id=3437 | |gene_id=3437 | ||
| Line 32: | Line 33: | ||
|species=human | |species=human | ||
|start=89327964 | |start=89327964 | ||
| + | |start_of_center_position=89327969 | ||
|strand=+ | |strand=+ | ||
|tata_box="-70(TCCCCTAAAAGC,-,0.00),-6(CCCTTTATATAG,+,0.00),-6(CCCTTTATATAG,-,0.00),-4(CTTTATATAGTT,+,0.00)" | |tata_box="-70(TCCCCTAAAAGC,-,0.00),-6(CCCTTTATATAG,+,0.00),-6(CCCTTTATATAG,-,0.00),-4(CTTTATATAGTT,+,0.00)" | ||
Revision as of 06:38, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89327969 |
|---|---|
| End of the center position in the TSS region: | 89327970 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF083470 |
|---|---|
| Distance: | 21 |
| Num_trans: | 8 |
| All_trans: | AF083470:21 AK312675:24 U52513:38 AK290427:-56 ENST00000371818.8:-71 uc001kgf.5:-71 NM_001289758:-146 NM_001549:-146 |
TATA-Box annotation
| Distance to TSS: | 151 |
|---|---|
| Nearest PromoterID: | NM_001549 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Alias: | CIG-49 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-70(TCCCCTAAAAGC,-,0.00),-6(CCCTTTATATAG,+,0.00),-6(CCCTTTATATAG,-,0.00),-4(CTTTATATAGTT,+,0.00)" |
