Personal tools

Difference between revisions of "TSS:Mm 99457.1"

From referenceTSS

Jump to: navigation, search
(Created page with "{{TSSDetail |all_trans=ENSMUST00000123500.2:0 AK182648:-267 AK204596:313 AK204598:313 AK212296:442 ENSMUST00000125819.8:483 |chr=chr11 |cpg_percent=0.01 |distance=0 |distance_...")
 
Line 6: Line 6:
 
|distance_to_tss=4429
 
|distance_to_tss=4429
 
|end=102434802
 
|end=102434802
 +
|end_of_center_position=102434752
 
|entrez_id=14824
 
|entrez_id=14824
 +
|epithelin=
 
|gc_percent=0.537313
 
|gc_percent=0.537313
|gene_alias=Pgrn|epithelin
+
|gene_alias=Pgrn
 
|gene_description=granulin
 
|gene_description=granulin
 
|gene_id=14824
 
|gene_id=14824
Line 24: Line 26:
 
|species=mouse
 
|species=mouse
 
|start=102434700
 
|start=102434700
 +
|start_of_center_position=102434751
 
|strand=+
 
|strand=+
 
|transcript_name=ENSMUST00000123500.2
 
|transcript_name=ENSMUST00000123500.2

Revision as of 10:18, 12 May 2019

Basic information about the TSS


TSS ID:mm_99457.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102434700
End:102434802
Strand:+
TSS Score:1
Start of the center position in the TSS region:102434751
End of the center position in the TSS region:102434752



Gene and protein annotation


Transcript_name:ENSMUST00000123500.2
Distance:0
GeneID:14824
HGNC/MGI_ID:MGI:95832
UniProt_ID:
Gene_name:granulin
Gene_symbol:Grn
Gene_synonyms:PC_cell-derived_growth_factor Pgrn acrogranulin epithelin progranulin
Gene_source:MGI:95832



Transcript annotation


Transcript_name:ENSMUST00000123500.2
Distance:0
Num_trans:6
All_trans:ENSMUST00000123500.2:0 AK182648:-267 AK204596:313 AK204598:313 AK212296:442 ENSMUST00000125819.8:483



TATA-Box annotation


Distance to TSS:4429
Nearest PromoterID:NM_008175
Entrez ID:14824
Nearest Unigene:Mm.1568
Nearest Refseq:NM_008175
Nearest Ensembl:ENSMUSG00000034708
Gene Name:granulin
Gene Alias:Pgrn
Gene Description:granulin
Gene Type:protein-coding
CpG%:0.01
GC%:0.537313
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):