Difference between revisions of "TSS:Mm 99644.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC116642:6 U56734:-17 AK028157:-29 ENSMUST00000021038.4:-32 ENSMUST00000100335.9:-54 NM_008626:-54 uc007lxh.1:-54 uc007lxi.1:-54 ENSMUST00000126931.1:-5...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=61 | |distance_to_tss=61 | ||
|end=105292714 | |end=105292714 | ||
| + | |end_of_center_position=105292707 | ||
|entrez_id=17534 | |entrez_id=17534 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=Endo180 | + | |gene_alias=Endo180 |
|gene_description="mannose receptor, C type 2" | |gene_description="mannose receptor, C type 2" | ||
|gene_id=17534 | |gene_id=17534 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:107818 | |hgnc_mgi_id=MGI:107818 | ||
| + | |mKIAA0709= | ||
|nearest_ensembl=ENSMUSG00000020695 | |nearest_ensembl=ENSMUSG00000020695 | ||
|nearest_promoter_id=NM_008626 | |nearest_promoter_id=NM_008626 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=105292699 | |start=105292699 | ||
| + | |start_of_center_position=105292706 | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC116642 | |transcript_name=BC116642 | ||
| Line 29: | Line 32: | ||
|tss_id=mm_99644.1 | |tss_id=mm_99644.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uPARAP= | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 10:45, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 105292706 |
|---|---|
| End of the center position in the TSS region: | 105292707 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC116642 |
|---|---|
| Distance: | 6 |
| Num_trans: | 10 |
| All_trans: | BC116642:6 U56734:-17 AK028157:-29 ENSMUST00000021038.4:-32 ENSMUST00000100335.9:-54 NM_008626:-54 uc007lxh.1:-54 uc007lxi.1:-54 ENSMUST00000126931.1:-57 AK054150:-57 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_008626 |
| Entrez ID: | 17534 |
| Nearest Unigene: | Mm.235616 |
| Nearest Refseq: | NM_008626 |
| Nearest Ensembl: | ENSMUSG00000020695 |
| Gene Name: | "mannose receptor, C type 2" |
| Gene Alias: | Endo180 |
| Gene Description: | "mannose receptor, C type 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
